Clostridium cochlearium: SAMEA4530647_2183
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Entry
SAMEA4530647_2183 CDS
T06756
Symbol
rlmCD_2
Name
(GenBank) tRNA (uracil-5-) -methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ccoh
Clostridium cochlearium
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccoh03009
]
SAMEA4530647_2183 (rlmCD_2)
Enzymes [BR:
ccoh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SAMEA4530647_2183 (rlmCD_2)
Ribosome biogenesis [BR:
ccoh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SAMEA4530647_2183 (rlmCD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Cons_hypoth95
Methyltransf_25
Methyltransf_15
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
N6_N4_Mtase
UPF0020
PCMT
Methyltransf_12
Ubie_methyltran
FtsJ
2-ph_phosp
Methyltransf_4
N6_Mtase
ACT
OmpA_membrane
Methyltransf_32
Methyltransf_23
Methyltransf_24
Motif
Other DBs
NCBI-ProteinID:
SNV88327
LinkDB
All DBs
Position
1:complement(2159954..2161321)
Genome browser
AA seq
455 aa
AA seq
DB search
MKKDIPVKKNNIYRVSITGMGTKGEGIGKIDNFTIFIPGAILGEEVEVNIIKVNKNYAVG
KLLNIIIASEERVKPICDIYTRCGGCQLQHMSYKEQLNFKRQKVKDALLRLGGIDVEVEA
VLGMKNPYRYRNKVQLPIGKENEKVSIGFYAPRSHNIIDLKTCLIQDEKADDIIKILREW
IEKFNVPIYNEKEHKGNLRHIMVRTAFKTGEVMVVLVTKDKNLPHKEELINKLIENLQGV
VSIIQNINSQKTNVVLGKESIVLWGKDKIIDYIANFKFAITPLSFFQVNPIQTEVLYNKA
LEYADLKGNEVVFDAYCGTGTISLFLSQKAKKVYGVEIVAEAIESAKLNAKENNVDNVDF
IVGESEQVIPELIEKGIKADVVVVDPPRKGCEKSLLEAMANMSPEKIVYVSCDPATLARD
LGVLEKLGYKTIRVQPVDMFSNTYHVENVVLLEKF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagatataccagtaaagaagaataatatatacagagtatccataacaggtatg
ggaacaaaaggtgaaggcataggaaagatagataattttactatctttatacccggtgct
attttaggtgaggaagtagaagtaaatataataaaagtaaataaaaattatgcagtagga
aaattattaaatataattatagcttctgaagaaagagtgaagccaatttgtgatatttat
acaagatgtggtgggtgccaattacaacatatgagttataaagaacaattgaattttaaa
agacaaaaggtaaaagatgctcttttaagattgggcggtatagacgtagaggtagaagca
gtattaggtatgaaaaatccatatagatatagaaataaagttcaacttcccattgggaaa
gaaaatgaaaaagttagtataggattttatgctccaagaagtcataatataatagattta
aaaacctgtcttatacaagatgaaaaagcagatgatattataaaaatattaagagagtgg
atagaaaaatttaatgtacctatatataatgaaaaagaacataaaggaaatctaagacat
ataatggtgcgaacagcttttaaaaccggtgaagttatggtggtattggtaactaaagat
aaaaatttacctcataaggaagagctaataaataaacttattgagaatttacaaggagtt
gtaagtattattcaaaacataaactcccaaaagacaaatgtagtattagggaaagaatct
attgtgctttggggaaaggataaaataatagattacatagcaaattttaaatttgcaata
acaccattatctttttttcaagtaaatccaatacaaacagaagtactttataataaagca
ttagaatatgcagacttaaaaggtaatgaagttgtatttgatgcttactgtggaacaggt
actatatctttatttttatctcaaaaggctaaaaaagtatatggagtggaaatagtagct
gaagccatagaaagtgcaaaattaaatgctaaggaaaataatgtggataatgtggatttt
atagtaggcgaatctgaacaagtaatacctgaattaatagaaaagggaataaaagcagat
gtagttgtagtagatcctccaagaaaaggttgtgaaaaatctcttctagaagctatggca
aatatgtcaccagaaaaaatagtttatgtatcctgtgatcctgcaactttggccagagat
ttaggcgttttagaaaagttaggttataaaaccataagagtacaacccgtagacatgttt
tccaacacataccatgtggaaaatgtggttttattggagaaattttaa
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