Clostridium cochlearium: SAMEA4530647_2191
Help
Entry
SAMEA4530647_2191 CDS
T06756
Symbol
dnaE
Name
(GenBank) DNA polymerase III DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03030
DNA replication
ccoh03430
Mismatch repair
ccoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4530647_2191 (dnaE)
03430 Mismatch repair
SAMEA4530647_2191 (dnaE)
03440 Homologous recombination
SAMEA4530647_2191 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccoh03032
]
SAMEA4530647_2191 (dnaE)
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_2191 (dnaE)
Enzymes [BR:
ccoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4530647_2191 (dnaE)
DNA replication proteins [BR:
ccoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA4530647_2191 (dnaE)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA4530647_2191 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
SNV88389
LinkDB
All DBs
Position
1:complement(2168738..2172220)
Genome browser
AA seq
1160 aa
AA seq
DB search
MVHKEYNWVSLHQHTEYSLLDSSAKIPELIKKAKKLGMKSIAITDHGVMYGCVEFYKEAV
KEGIKPIIGCEIYVVPKSMYIKRVDNDNDIYHLVLLVKNDIGYRNLMRIVSKASIDGFYY
KPRVDHEFLREHSEGLIALSACLGGEIQSYILRGNIEKAEKVALTYKEIFKEGFYLELQD
HGLKEQVKVNNELIAMSKRLSIPLVVTNDVHYIEKEDSRAHDILLCVQTGKTVDEEDRMK
YPTGEFYLKSPKEMYDLFSHVPDAIENTVKIAEQCNFKYNFHESKLPTFPLPEKVNNYEY
LRDLCYKGLRAKYETIDEKLKNRLEYELNVIREMGYVDYFLIVWDFIRFATEKGIMTGPG
RGSGAGSIVAYTLGITKIDPIKYGLIFERFLNPERVSMPDIDSDFCYERRQEVIDYVVEK
YGEDNVSQIITFGTMAARACIRDVGRAMNYSYAEVDKVAKMIPTMLNITIDKALELNPEL
KDIYENDYRIKDLINVAMKLEGLPRHTSTHAAGVVIASHPLVNYVPLQKNEENIVTQFTM
GTLEELGLLKMDFLGLRTLTVMRDAVAMIKENRGIDIDLDKLDFDDREVYKMIGEGKTVG
VFQLESDGMTSFMKELKPDSLEDIIAGISLYRPGPMAEIPKYIANKKSPEKIEYVTPELK
DILSVTYGCMVYQEQVMEIVRKLAGYSMGRSDLVRRAMSKKKHDVMEEERKNFVYGIIDE
NGNIEVPGCIRNGIDEKIGNKIFDSMLDFASYAFNKSHAAAYAVIAFQTGYLMRYYPTEC
IAAMLNSIMGNSEKVAYYTRYAKEEGMEVLPPDINESYAKFTVKGNKIRFGLAAIKNVGL
NAIENIVKTRNEKGKFINLEDFCSKLDLGCINKRAMESLIKAGAFDSFKIFRSQMLAVHE
KVLDSINNDKKKNIQGQVNLFEELEESSLEIQYPNINEFDKKSILSMEKEMTGLYLSGHP
LDEYKDDLKNKISINISDIVSDSGLEENLIESERKVKDGEKVIIGGIITNVTKKITRNNQ
MMAFIEVEDLYGSIEVIVFPKILSKYKDIISEDEIVILKGRINLREGEAPKLISEDISLF
SQYEKEKKIYIRIERKNDLKTSLSQLRIISNQHLGNTPIYLYIEEINQTYIVKEDLWLSN
NIEVIEWMKRSFGNENVKVV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggtacataaagaatacaattgggttagtttacatcagcatactgaatactctctttta
gatagttctgctaaaataccagaattaataaaaaaagctaaaaaattaggtatgaaaagc
attgctataacagatcatggagttatgtatggatgtgtagaattttataaagaagctgta
aaagaaggtataaaacctataataggctgtgaaatatatgtagttccaaagtccatgtat
attaaaagagtagataatgataatgatatatatcatctagttcttttagttaaaaatgat
atagggtatagaaatttaatgaggattgtcagtaaagcatctatagatggattttattat
aaaccaagagtggatcacgaatttttacgagaacatagtgaaggactaattgctttaagt
gcttgtttaggaggagagattcaatcctatatattaagaggaaatatagaaaaagctgaa
aaagttgctttaacctataaagaaatatttaaagaaggtttttatttagaactgcaggat
catggacttaaagaacaagttaaggtaaataatgaacttatagctatgtctaaaagatta
tcaattccattagtggtcactaatgatgtgcattatatagaaaaagaagattctagagca
catgatatactgctttgtgtacagactggaaaaactgtagatgaagaggatagaatgaag
tatcctacaggagaattttatttaaaatctccaaaagaaatgtatgacttattttcacat
gtgcctgatgcaatagaaaatacagtgaaaatagccgaacaatgtaattttaaatataat
tttcatgaatctaagttgcctacctttcctcttccggaaaaagtaaataattatgaatat
ttaagagatctgtgttataaaggattaagagcaaaatatgagactatagatgaaaaatta
aaaaatagacttgaatatgagctaaatgtaataagagaaatgggatatgtggattatttt
cttatagtgtgggattttataagatttgctacagaaaaaggtataatgacaggtccagga
agaggaagtggcgcaggatctattgtagcctatactttgggaataactaaaatagatcca
attaaatacgggttaatatttgaaaggtttttaaatcctgaaagagtgtccatgccagat
attgatagtgatttttgttatgaaagaagacaagaagttatagattatgtagtagaaaag
tatggagaagataatgtatctcaaataattacatttggaactatggctgctagagcttgt
ataagggatgtgggaagggcaatgaattattcttatgcagaggtagacaaggtagctaaa
atgattccaactatgttaaatataactattgataaagcattagaattaaatccagaacta
aaggatatatatgaaaatgattataggataaaggatttaataaatgtggctatgaaatta
gaaggattaccaagacatacttctactcatgcagcaggagtagtaatagcatctcatcca
ttagtaaattatgtacctttacaaaaaaatgaagaaaatatagttacacagtttactatg
ggaactctagaagaacttggattattgaagatggattttttaggattaagaactttgaca
gtaatgagagatgctgtagctatgataaaagaaaacaggggaatagacatagatttagat
aaattagattttgatgatagagaagtatataaaatgataggagaggggaaaactgtaggt
gtattccaattggaatcagatggaatgacaagctttatgaaggaattaaaacctgattcc
ttagaagatataatagcaggaataagtctttatagaccggggcctatggcagagattcct
aaatacattgctaataaaaagagtccagagaaaatagaatatgtaacaccagaattaaaa
gatattctctctgttacctatggatgtatggtttatcaagaacaggtaatggaaattgtt
aggaaattagctggatactctatgggaagaagtgacttagtaagacgtgcaatgtctaaa
aagaaacacgatgtaatggaagaggaaagaaaaaattttgtatatggaattatagatgaa
aatggaaatatagaagtacctggatgcatacgcaatggtatagatgaaaaaatagggaac
aaaatatttgattctatgctggattttgcatcttatgcatttaataaatcccatgcagca
gcctatgcggtaatagcttttcaaacaggatatttaatgagatattatcctacggaatgt
attgcagcaatgttaaatagcatcatgggtaatagtgaaaaagtagcatactatacaagg
tatgctaaagaagaaggcatggaggtactaccgccagatataaatgaaagttatgctaag
tttactgtaaaaggaaataagataagattcggattagctgctattaaaaatgtaggatta
aatgctatagagaatattgtaaaaaccagaaatgaaaaaggaaaatttattaatttagag
gatttttgctctaaattagatttagggtgcataaataaaagagctatggaaagtttaata
aaagcaggagcttttgatagttttaaaatttttagatctcaaatgttggcagtacatgaa
aaagttttagattcaataaataatgacaaaaagaaaaatattcaagggcaagtaaattta
tttgaagagcttgaagaaagtagtttagagatacagtacccaaatataaatgaatttgat
aagaaaagtatactttctatggaaaaagaaatgacaggactatatctatcgggacatcct
ttagatgagtataaggatgatttgaaaaataaaatatctataaatatatcagatatagtt
tctgatagtgggttagaagaaaacttaatagaaagtgaaagaaaagtaaaggatggagag
aaagttataattggtggaataataactaatgtaactaagaaaataacaagaaataatcag
atgatggcttttatagaagtagaagatttatatggatctatagaagtaatagttttccct
aaaatactttctaaatataaagatattatatctgaagatgaaattgttatattaaaaggc
agaattaatttaagagaaggagaagcaccaaaacttattagtgaagatataagtttattt
tctcaatatgagaaggagaaaaaaatctatataagaattgaaagaaaaaatgatttaaaa
acttctctaagtcaattaagaataatatcaaatcagcatttaggaaatacgcctatttat
ttatatatagaagaaattaatcaaacttatattgtaaaagaggatttatggttaagtaat
aatatagaagttatagagtggatgaaaagaagttttggcaatgaaaatgtaaaggtagta
taa
DBGET
integrated database retrieval system
