Clostridium cochlearium: SAMEA4530647_2352
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Entry
SAMEA4530647_2352 CDS
T06756
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh00470
D-Amino acid metabolism
ccoh00550
Peptidoglycan biosynthesis
ccoh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SAMEA4530647_2352 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SAMEA4530647_2352 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ccoh01011
]
SAMEA4530647_2352 (murD)
Enzymes [BR:
ccoh01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
SAMEA4530647_2352 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ccoh01011
]
Precursor biosynthesis
Amino acid ligase
SAMEA4530647_2352 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Pyr_redox
MurD_N
AlaDh_PNT_C
2-Hacid_dh_C
NAD_binding_8
Motif
Other DBs
NCBI-ProteinID:
SNV89574
LinkDB
All DBs
Position
1:complement(2318456..2319832)
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AA seq
458 aa
AA seq
DB search
MNKDFNEFKKFIYNKKVAIIGLGISNMPLIEFLSNLGARVTGFDKKNEDELGKDIEKLKE
KGVNFELGSNYLDKLSNFDVVFRTPSMRVDHPILTKAKSEGAYITSEMEQFIKYCPAKLF
CVTGSDGKTTTTTLIYNMLKAEGYTVWIGGNIGTPLFTEIEKIKKEDMVVLELSSFQLMS
IKEPVEVALITNVSPNHLDIHKDMEEYIEAKKNIFKYQRKDDLLVINEDNKVTKSMEKEC
IGRVLKFSMKEKLKKGAFFYDEYLYINEKKVCNMNEVKLKGMHNIENLLAAFCCVSEDIS
IDSMGKVAKNFAGVEHRLELVKEIQGVKYFNDSIASSPTRTLAGLKSFDRPVILIAGGYD
KNISFDILAKEGISHIKHLILLGDTKYKIEEAFKNIMKDSNQYIPISICNSIEEAVNIAK
ENAKFGDIVTLSPACASFDMFKNFEERGNKFKSIINNL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggattttaatgaatttaaaaagtttatatacaataagaaggtagcaataata
ggtttaggtattagcaatatgcccttaatagaatttctttctaatctaggtgccagggta
acaggatttgataaaaaaaatgaagatgagttaggaaaggatatagaaaaattaaaagaa
aagggagttaactttgagttagggagcaactatttagataaactttcaaattttgatgtt
gtttttagaacaccgtccatgagagtagatcatcctattttgacaaaagctaaatctgaa
ggagcatatataacctcggagatggaacagtttataaaatattgtccagcaaaattattt
tgcgtaacaggtagtgatggaaaaacaactaccactactttaatatacaatatgttaaaa
gctgaaggatatactgtatggataggtgggaatatagggactcctttatttactgaaatt
gagaaaataaaaaaagaagatatggtagttttggaattatcaagtttccagttgatgtct
attaaggaacctgtagaagttgcacttataacaaatgtatctcctaaccatttggatatt
cataaagatatggaagaatatattgaagctaaaaagaatatttttaaatatcaaagaaaa
gatgatcttttagtaattaatgaagacaataaagtaacaaaatccatggaaaaggaatgc
ataggaagagtacttaagtttagtatgaaagaaaaattaaaaaaaggtgcctttttttat
gatgaatatttatatattaatgaaaaaaaagtttgtaatatgaacgaagtaaaattaaaa
ggaatgcacaacatagaaaatttattagcagccttttgttgtgttagtgaagatattagt
atagatagtatggggaaagtggcaaaaaattttgcaggggtagaacatagactagaatta
gtgaaagaaattcaaggagttaaatattttaatgattctattgcatcaagtccaactaga
acactagctggattaaagtcttttgatagaccagttattttgattgcaggaggatatgat
aaaaatatatcttttgatattttagctaaagagggaatttctcatataaagcatttaata
ttattaggtgatactaaatataagatagaagaagcttttaaaaatataatgaaagatagc
aatcaatatattcctatttctatatgcaattctatagaggaagctgtaaatatagctaaa
gaaaatgcaaagtttggagatatagtaaccttatctcctgcttgtgctagcttcgatatg
tttaagaactttgaagaaagaggaaataaatttaaaagtattataaataacttgtaa
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