Campylobacter coli RM5611: YSU_01120
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Entry
YSU_01120 CDS
T03167
Name
(GenBank) helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ccoi
Campylobacter coli RM5611
Pathway
ccoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YSU_01120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoi03400
]
YSU_01120
Enzymes [BR:
ccoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YSU_01120
DNA repair and recombination proteins [BR:
ccoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YSU_01120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
Viral_helicase1
AAA_19
UvrD_C_2
SLFN-g3_helicase
AAA_5
AAA_11
AAA_24
AAA
ATP_bind_1
AAA_14
AAA_16
RsgA_GTPase
NB-ARC
AAA_22
PIF1
NACHT
AAA_7
NPHP3_N
ABC_tran
bpMoxR
Ig_SIBA-E_2nd
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AHK74494
LinkDB
All DBs
Position
221038..223776
Genome browser
AA seq
912 aa
AA seq
DB search
MRKDGLENNILIQILDIDRNINKNIVRNKEDRGFLSQNILNELRNLLEHIALCIYNTDTN
QQLDSIYENLQSSLKYIGDKRKYKDIKNFHNLLQISVSHYTPNEEVAERLMLKYLFYLFQ
TRNFCKEFLDIQILNNLQEFPINLDTLSFQYYERVVDKIKQTSMFNDTKTDKFYIQKVKP
FIINEEIYYEITFTIAKDNVSKFDKLIAFSKYYIPSNYSTKLTLYYTNIKLLNLQIPVIL
ILQWNIDIRPCEFTNFCLIFNSIRMSFTRSTKYEHFMQFLTKEELNLLDIVKLKTEEYDE
IKNQFSEDKLKHLFNCLDMAREIILNNKSGSNILSYILYAMNNQIIKKQIPKKKNSYQPN
PKLSNLFLKNESIPFDEMPFCSNPAGHIPKLNVLFECISLNNREYELLARKIQYNSEVNG
SLYTSLEDFKEDNIEVLIEKYNTALYNGHKKNRSIKKLHDKFLFINEYQDTLIEIIQLLN
NFTKSGLDHYKENINEWLKECNQLDCKEKKDYLSNLFCNSKLALIYGAAGTGKTTLIEHI
SSFFHDKNKLYLANTNTAVNNLRQRLDIQNSSFSTVASYIANKNNISKKFDIVFIDECST
ISNKDIFSVLDDIKLKCEILICVGDIYQIESIRFGNWFLFAQKFFSDIQLELKHIYRTKS
EKLQLLWERVRTLDESMLEAIEKNNSSENIQNFNFSRSVNDEIILCLNYGGIYGVNNINK
FLQENNPHKSFYFNGLSYKVDDPILFNENSSSFGEEFHNNLKGIITNIEEDEKTINFTIK
INKIIQNINNNFKIVAKDDKGTEIKFSVARLNSDEEDDNSNIVPFQVAYAISIHKAQGLE
YDKVSIVVADEIEEQVTHNIFYTAITRAKKELKIYWSAETENKILKSLKIKDINKDFHLF
KNNIQNIKTLKN
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaaagatggtttggaaaataatatactgatacagattttggatattgatcgcaat
attaataaaaatattgttaggaataaagaagacagaggttttttatctcaaaatatttta
aatgagctaagaaatttattagaacatatagccttatgtatttataatactgatacaaat
cagcaattagatagtatttatgaaaacttgcaatcaagtttaaaatacattggagataaa
agaaaatataaagatataaaaaattttcataatttacttcaaatttcggtatctcattat
acacctaatgaagaagttgctgaaagattaatgttgaaatatttattctatttatttcaa
acaaggaatttttgtaaagaatttttagatattcaaatattaaataatttacaagaattt
ccaataaatcttgatacgttgagttttcaatattatgagcgtgttgttgataaaattaaa
caaacaagtatgtttaacgataccaaaacagataagttttatattcaaaaagtcaaacca
tttataattaatgaggagatatattacgaaataacttttactatcgcaaaagataatgta
agtaaatttgataaattaattgctttttcaaaatattacattcctagcaattattctaca
aaattaactttgtattatacaaatataaaactactaaatttgcaaatacctgttatttta
attcttcagtggaacatagatattcgtccttgtgagtttactaatttttgtttaatattt
aattcaataagaatgtcttttacgagaagcacaaaatacgaacattttatgcaatttcta
acaaaagaagagcttaatttgcttgatattgtaaaattaaaaactgaagaatatgatgaa
ataaaaaatcaatttagtgaagataaattaaagcatctatttaattgtttggatatggct
agagagataatcttaaacaataaatccgggtcaaatattcttagttatatattatatgca
atgaataatcaaattatcaaaaaacaaattcctaaaaagaaaaatagctatcaacctaat
ccgaaactatcaaatttatttttaaaaaatgaaagcattccatttgatgaaatgccgttt
tgttcgaatccggcaggacatattccaaaattaaatgttttatttgaatgtattagttta
aataatagggaatacgaattattggctaggaagattcagtataattcagaggtaaatggt
tctttgtataccagcttggaagattttaaagaagataatattgaagtattgatagaaaaa
tataatacagcattatataatggacataagaaaaatagatcaataaaaaaacttcatgat
aaatttttatttataaatgaatatcaagatacactaatagagataattcaattattaaat
aattttacaaaaagtggtcttgatcattataaagaaaatataaacgaatggttgaaagaa
tgtaatcaattagattgcaaagaaaaaaaggattatttaagcaatctattttgcaattca
aaactagcattgatatatggagcagctggaactggaaaaacaacattaatagaacatata
tctagtttttttcatgataagaataaattatatttagccaatacaaatacggctgttaac
aatttaagacaaagacttgatattcaaaattcatctttttctactgttgcttcatatata
gcaaataaaaataatatttcgaaaaaatttgatattgtatttattgatgagtgtagcact
attagcaataaagatatttttagtgttttagatgatataaagttaaagtgtgaaatttta
atttgtgtaggcgatatatatcaaattgaatctatcaggtttggaaattggtttttattt
gctcaaaaatttttttcagatattcaattggagttaaagcatatttatagaacaaaaagt
gagaaattgcaattattatgggaaagagttagaacacttgatgaaagcatgcttgaggct
attgaaaaaaataatagttctgaaaatattcaaaattttaatttttcacgaagtgtaaat
gatgaaattattttatgtttgaattatggtggtatatatggagtaaataatataaataaa
ttcttacaagaaaataatcctcataaatcattttattttaatggattatcttataaggtt
gatgatccaattttatttaatgaaaattcatcaagttttggcgaagaatttcataataat
cttaaaggaattataactaatatcgaagaggatgagaaaactataaattttactattaag
attaacaagataatacaaaatataaataacaattttaaaatagtagctaaagatgataaa
ggtactgaaattaaatttagtgttgcaagattaaattcagatgaagaagatgataatagc
aatatcgttccttttcaagtagcatatgctatttctatacataaagcacaaggcttagaa
tatgataaagtttctattgttgtagctgatgaaattgaagaacaagttacacataatatt
ttttatacagcaattaccagagctaaaaaagaattgaaaatatattggtctgcagaaact
gaaaataaaatattgaaatctttaaaaatcaaagatataaataaagattttcatttattt
aaaaataatattcaaaatataaaaacattaaaaaattag
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