Campylobacter coli RM5611: YSU_02660
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Entry
YSU_02660 CDS
T03167
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ccoi
Campylobacter coli RM5611
Pathway
ccoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSU_02660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoi03019
]
YSU_02660
03016 Transfer RNA biogenesis [BR:
ccoi03016
]
YSU_02660
Enzymes [BR:
ccoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
YSU_02660
Messenger RNA biogenesis [BR:
ccoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YSU_02660
Transfer RNA biogenesis [BR:
ccoi03016
]
Prokaryotic type
tRNA degradation factors
YSU_02660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
S1_RRP5
S1_2
Mrpl_C
Motif
Other DBs
NCBI-ProteinID:
AHK74777
LinkDB
All DBs
Position
complement(527229..529388)
Genome browser
AA seq
719 aa
AA seq
DB search
MQYSIEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREEKPVEEDFLPLTVQYIE
KAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVD
LQVMSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKDE
LLMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGSNA
YEEAFLKHKKSSDLNFKDEIENFELLAFIENNFHDQIVQAINQMAKSERASELNKIAEKI
LNFESATKWDEESILNALAKVKHKIVRSQILNTKKRADGRNLNEVRPIAIETNILPNAHG
SCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPINERFMVNYNFPGFSVGEASPIKAPG
RRELGHGNLAKRALYPSIDENYPYIIRLVSEILESNGSSSMATVCGGSLALRAAGVPSLK
LVAGVAMGLIFEGDQYAILTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGIDQKIL
KEALYQAKEGRIHILNIMEEALKEIVVNEEVLPKLELFNVDPSKIVDIIGQAGKTIKEII
EKFGVSIDLDREKGEVKIAGNENEQIKAAKDYIINITSSQKNNKKGFKEKDLSNFEIGEE
FEGKVKKITNFGAFIELKNGIDGLLHNSKSKNLNLSENQILKVKVSEIKNGKISVDLCE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgcaatacagtatagaaatcaatggcaatttagaagtattcgatatagaaaaagtagct
aaacaagctgcaggtgctgtgcttatgcgacaaggaaaaagtgtcgttttagccgcggtt
gcaagagaggaaaagcctgttgaagaagactttttgcctctaactgttcagtatatagaa
aaagcctatgcagcaggaaaaatcccgggcggctatgttaaaagagaaaccaaaccaagc
gatgcagaaactttaactgcacgcattatagacagaagtttgcgtccactttttccaaaa
ggatatgcctacccgacacaaattgtcgtaatggttctttctgctgatcctcaagtagat
cttcaagttatgagtctaaatgcagcaagcgtagcactttatcttagtgatattcctatg
aaagctcctgtttgtggagttcgcataggtcgcatagaagaaaaatttgtcctaaatcca
aacaatgaagaacttaaaaatagcacccttgatctttatgtagcaggggttaaagatgag
cttttaatgatagaaatgcgtgctttacctaatcaaaaagaagatgaaatctttatcgaa
gttccttatgcagatgttttaacccaaacaacttcacaaagcatgaatgaacttagcgaa
gatgaaattttagaagcgctaagtctagcccaaaaagctatattaaatggctctaatgct
tatgaagaagcttttttgaaacataaaaaatcaagcgatttaaatttcaaagatgaaata
gaaaatttcgaacttctcgcctttatagaaaataattttcacgatcaaatcgtacaggct
atcaatcaaatggcaaaaagtgaaagagcgagtgagttaaataaaattgctgaaaaaata
ttaaattttgaaagcgcgacaaaatgggatgaagaaagtattttaaatgccctagcaaaa
gtcaaacataaaatcgttcgtagccaaattttaaatacaaaaaaaagagcagatggtaga
aatttaaatgaagtgcgtcctattgccatagaaacaaatattttacctaatgcacatggc
tcttgcctttttacacgcggacaaactcaagctttggttgtggcgactttaggtagtgaa
aatgatgcgcaaatggttgatgtgttaaccgaaaaaaatcctatcaatgaacgctttatg
gttaattataattttccaggtttttcagtaggcgaggcaagccctatcaaagcacctgga
agaagagagttaggacatggaaacttagccaaaagagccctttatccaagcatagatgaa
aattatccttatattatccgtttggtaagtgaaattttagaaagcaatggctctagttct
atggcaacggtttgtggagggtctttagccttaagagcagcgggagtacctagcttaaaa
cttgtagcaggagtagctatggggcttatttttgaaggcgatcaatatgctattttaact
gatatcatgggcttagaagatcatgatggggatatggattttaaagtagcaggtagcaaa
gacggtatcacagccttacaaatggatatcaaattgggcggtattgatcaaaaaatactc
aaagaagccttgtatcaagctaaagaaggtagaattcatatcttaaatatcatggaagaa
gcacttaaggaaattgttgttaatgaagaggtattgccaaaactcgagcttttcaatgtt
gatccttcaaaaatagtcgatatcataggtcaagctggaaaaactatcaaagaaattatt
gaaaaatttggtgtttctatagacttagatcgtgaaaagggtgaagtaaaaattgcgggc
aatgaaaacgaacaaattaaagccgcaaaagattatattatcaatatcacaagttctcaa
aaaaataataaaaaaggctttaaagaaaaagatctatcaaactttgaaatcggcgaagaa
tttgaaggaaaagtcaaaaaaatcacgaattttggagcctttatagaacttaaaaatgga
attgatggcttgcttcataattctaaaagtaaaaatctcaatttaagtgaaaatcaaatt
ttaaaagtaaaagtaagtgagattaaaaatggcaaaatctctgtggatttatgcgagtga
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