Campylobacter coli RM5611: YSU_05625
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Entry
YSU_05625 CDS
T03167
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ccoi
Campylobacter coli RM5611
Pathway
ccoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YSU_05625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoi03400
]
YSU_05625
DNA repair and recombination proteins [BR:
ccoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YSU_05625
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YSU_05625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
UB2H
SWI2_SNF2
AAA
Focal_AT
Microtub_bd
Cor1
AAA_17
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AHK75332
LinkDB
All DBs
Position
1104053..1106026
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AA seq
657 aa
AA seq
DB search
MLELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIM
SHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLR
LSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFELDMQISQKELLKKLVDMGYKR
NDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMC
KGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQT
LVDYGFRLPSALDNRPLMFDEFIHKDCQFLFISATPAPLELELSKENIFHQIMRPTGLLD
PLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMG
RAARNVNGKVLLFCKKITKSMQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKNE
ENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALEFEKAATLRDEINKLKDL
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgttagaacttacaagcgattttaaaccaagtcctgatcaagaacaagcaatacaaggt
attgtcaaaagcataaaaaaaggtaataaatatcaaaccctactcggcgtaacaggaagc
ggaaagacttttaccatggcaaatgtcataaaagaactcaatatgccaacccttatcatg
agtcataacaaaagcctttgcgcccagctttatagcgaatttaaaggttttttttctaag
aaccatgtggaatattttatttcttattatgattattatcagcctgaagcttatataccg
cgcaccgatgtttttatagaaaaagatagctccacaaatgaggatctagaacgcttaaga
cttagcgcaactgcttcgcttttaagctatgaggatgtggtttgtatcgctagtgtctcg
gctaattatggacttggaaatccaaatgaatacataggaatggttttaatctttgaacta
gacatgcaaatttcacaaaaagaacttttaaagaaacttgtagacatgggttataaaaga
aatgataatttctttgatcgtgctgattttcgcgtacaaggtgatattatagatatttat
cctgcttattacgaagatgaagtagtaagacttgaattttttggtgatgaactggatgca
atgtatcattataatgttttagaaaataaaaaaggcaaagatttaaaacgcttcatactt
tatcctacaagccagtttagtgtaggtgaaacaagactaaaacaagcgataaaagacata
aaagcagaacttaacgaacgccttgcttattttgaacatgaaaataaactcgtagaatat
caacgccttaaacaaagggttgaatttgatcttgaaatgcttacaagcacaggaatgtgt
aaaggcgttgaaaattatgcaagacatttaacagggcttaaagaaggtgatactccttat
acgctttttgattattttgcgattaaaaataggaaatttcttgttatagtcgatgaaagc
catgtttctttaccacaatttagaggtatgtttgcaggagatagaagtagaaagcaaact
ttagtagattatggttttcgtcttccatcagctcttgataatcgtcctttaatgtttgat
gaatttatccataaagattgtcagtttctttttatttcagccacccctgccccgcttgag
cttgaacttagcaaggaaaatatctttcatcaaattatgcgtccaacaggattacttgat
cctttgatagaacttaaagatagcgataatcaagttgaaattttatttgatgaagccaaa
aaagttatacaaagaaacgaacgcgttttagttactgtgttgactaaaaaactagctgaa
gagcttacaaggtattatttagaacttggtattaaagtaaaatacatgcattcagatatt
gatgcaatagaacgcaatgaaatcataagaggcttaagaagcggtgcttttgatatgtta
ataggtataaatttacttagagaaggacttgatttgcctgaggtttcgcttattgccatt
atggacgcagataaggagggttttttaagaagcactacaagtttaatccaaaccatggga
agagctgctagaaatgtcaatggtaaagttttactcttttgcaaaaagattacaaaatcc
atgcaagaagctatggatactacaaatgagcgtcgcaaacttcaagaagcttacaatcaa
aaacataacatcaccccaacttcagtcaagcgacacatcgaagaaagtttaaaaaatgaa
gaaaacttaggagaaatttatcgcaaaggtaaaaaatttgaaaaaatgcctgctaatgaa
agagctaaaatcgtaaaagagcttcgtaaacaaatgcttgaagctgctaaagcgctcgaa
tttgaaaaagcagcgactttaagagatgagatcaataaattaaaagatttatag
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