Campylobacter coli 76339: BN865_11360c
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Entry
BN865_11360c CDS
T02811
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccol
Campylobacter coli 76339
Pathway
ccol02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccol00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN865_11360c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccol03021
]
BN865_11360c
Transcription machinery [BR:
ccol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN865_11360c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Sigma70_ner
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
CDG57343
LinkDB
All DBs
Position
complement(1074428..1076290)
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AA seq
620 aa
AA seq
DB search
MNAKTQDMELEELFKENEEDYITYEKLVKYFSKQPNSASAKKVQALMKKYKVQLFSAAEI
AQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLN
KDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYREPLINRERRVKELFKSFDDEEKGD
DKLDDLELEDEENDEELENEEAPKKTSKKEDERTLKVIEKFKALEKAKKDWLKVSKDKES
GDEILDKLGIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLEYRLP
MFSEELKNRHANILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKEASEKSFDLEKE
RLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAV
DKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGK
EPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHIL
KDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAI
KKLKHPKVGRKLKNYIEGWK
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccaaaactcaagatatggaacttgaagaactctttaaagaaaacgaagaagat
tatatcacttatgagaaattagtaaaatatttcagtaagcagcctaattcagctagcgct
aaaaaagttcaagctttaatgaaaaagtataaagtacaactcttctcggcagctgaaatt
gcacaaatgaaaaatatagaagacgcaaaaagactacaagaagaaaaacaaaaattacaa
gatactagccttgaaaatgaattcgatttggccaatgaaaatgatttgcttgagtggagc
agatcagattctcctgtgcgtatgtatctaagagaaatgggacaaattgcacttctaaac
aaagatgaagaaattgaaatttctaaaaaaattgaacttggtgaagatattatcatagat
gctttttgttctgtaccttatttgattgattttatcttagattaccgtgaacctttaatt
aatagagaaagaagagtaaaagagctttttaaaagttttgatgatgaagaaaaaggcgat
gataaactggatgaccttgaacttgaagatgaagaaaatgatgaagaattagaaaacgaa
gaagcacctaaaaaaacaagcaaaaaagaagatgaaagaaccttaaaagttatagaaaaa
ttcaaagccttggaaaaagcaaaaaaagactggttaaaggtttctaaggataaagaaagt
ggagatgaaattttagataaacttggcattgcttttaagaaaaatatcctaaaagaaaaa
ttaatggatctaggcccaacttccaaactcatcagtgaaattgtaaaatcaatggaaacc
gctctaaaaagcgatgaggaattcgataaagaattaaaacgcctagaatatcgcttgccg
atgttttctgaagaattaaaaaatcgccacgctaatatcttaaaagatattacaaaatta
agtaaagaagaaattaccgaaagagcgcttgagacaactatggtaagcacttacatggag
ataaaaaaactttttcaaaccaaagaagcaagtgaaaaaagttttgacttagaaaaagag
cgcttgaaagaaattttagagcaaatcaagcgaggtaaaaaaatttctgatgaagctaaa
actagaatggctaaatcgaatttgcgtcttgttgtaagtattgctaagcgttatacaaac
cgtggcttaccttttttagatcttattcaagagggcaatataggtcttatgaaagcggta
gataaatttgagtataaaagaggatataaattttcaacctatgcaacttggtggataaga
caagccatttcaagagcgattgcagatcaagctagaactataagaatacctattcatatg
atagaaaccatcaatcaaatcaataaaatcatacgcgaacatttgcaaaaagatggaaaa
gaaccggatgtaagcgttatagctaaagaagtgggacttagtgtggataaagttaagcag
gtgattaaaatcacaaaagagcctatttcgcttgaagcacctattggaagcgaggatgat
ggtaaatttggggattttgtagaagatagaaattcactctcgcctatggatcatatctta
aaagatgacctaaaagaacaaattgatgaagttcttgatcagttaaatgatagagaaaaa
gcagttattcgtatgcgttttggtttaatggatgatgaaagcgatagaaccttagaggaa
ataggcaaagaattaaatgttacacgcgaaagagtaagacaaatagaaagctctgcgatt
aaaaaacttaaacatccaaaagtaggtagaaaactcaaaaactatatcgagggttggaag
taa
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