Coprococcus comes: I6K69_14635
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Entry
I6K69_14635 CDS
T07118
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccom
Coprococcus comes
Pathway
ccom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6K69_14635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccom03400
]
I6K69_14635 (mfd)
Enzymes [BR:
ccom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6K69_14635 (mfd)
DNA repair and recombination proteins [BR:
ccom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6K69_14635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
T6SS_Tse3_N
Motif
Other DBs
NCBI-ProteinID:
QRT49441
LinkDB
All DBs
Position
2998759..3002109
Genome browser
AA seq
1116 aa
AA seq
DB search
MHALTAPLSELAEIEEICEERGREPGMLLLSGCVTSQKTHLMYALGKDYGHTLIVLSSED
KAKKLYEEYRFLNENTSYYPAKDLLFYQADIHGKQLVKQRMETLQMMMEAKSQVTVITTI
DGFMDELPSEAEIKGDILTISNGEALEFESLKEKIIKLGYDREAQVDGPGQFAVRGGIID
IYPLTEELPIRIEFWGDEVDSIRTFDVDSQRSVENLEQIVIYPADDRLGSDRKVSFINYF
DPKDTLVFLDEPARLLEKGRLAENEVEKARENRAEEMERTGEMEEAPEFFTTDEIIKFLN
KFCMIGMCALEMKCKPFFVKKRFGIQAKSVNPYNSSFEMLTQDLKRLKRNGYRAVLISGS
RTRAKRLAEDLRDYDLSSFYSEDQEREVNPGEIMVCYGHIEVGYEYPMIKFIVISESDIF
GKTKKKKKRKSYDGQKISSFSDLKPGDYVVHENHGLGIYRGIEKIEVDKVTKDYMKISYA
DGGNLYILATQLDQIQKYASADAKKPKLNKLGGQEWHRTKSKVKTAVWQIAKDLVELYAV
RQSKEGFVYEKDTVWQKEFEEMFPFEETEDQQLAIEATKRDMESPKIMDRLICGDVGFGK
TEIAIRAAFKAVQENKQVVYLVPTTILAQQHYNTFVQRMKEFPVRVDLLCRFRTPAQQKK
TIEDLKKGQVDIIIGTHRVLSKDVAFKDLGLLIIDEEQRFGVQHKEKIKKLKENIDVLTL
TATPIPRTLHMSLIGIRDMSVLEEAPVDRMPIQTYVMEENDEMVREAIEREISRQGQVYY
VYNRVQDIAEMAAKIQKLVPDANVAYAHGQMREHKLEDIMYDFINGEIDVLVSTTIIETG
LDISNANTMIIHDADRMGLSQLYQLRGRVGRSNRMAYAFLLYRRDKMLREVAEKRLSAIR
EFTDLGSGVKIAMRDLEIRGAGNLLGEEQHGHMDAVGYDLYCKMLSEAVRHLKGEIPEET
YATTVDLNIDAYIPASYIPNEYQKLDIYKRIAAIETEEEQEDMLEELIDRFGDPPRKVQQ
LLMIAQLKAKAHAAYVISVEQKGDEYKFTMYEKARVNVAKIPELLAKYKGELTFKTDAEN
PYFIYCKLRKNKKEKAEQILENAGKIVEDIQGLVEE
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgcatgcacttacggctcctttatctgaactggcagagattgaagaaatctgtgaagag
cgtggacgggaaccgggcatgctgcttctttccgggtgtgtgacatcacagaaaacgcat
ttgatgtatgcgcttggaaaagattatgggcatacattgatcgttctttccagtgaagat
aaagcaaaaaaattatacgaagaatatcgttttttaaatgaaaataccagctattatccg
gcaaaggatctccttttttatcaggcagatatccacggaaaacagctggtcaaacagcgg
atggaaaccttgcagatgatgatggaggcaaaaagccaggttacggtcattacaacgatt
gacggattcatggatgaactgccatcggaagcagaaataaaaggagacattctgaccatt
tccaatggggaggcgctggaatttgaatcgctgaaggagaagatcataaaacttggatat
gacagggaagcccaggtggatggtccggggcagtttgcagttcgtggtggaatcattgat
atttacccacttaccgaggaattgccgatccgtattgaattctggggagatgaagtggat
tcaatacggacttttgacgtggacagccagagatctgtagagaatctggaacagatcgtt
atttatccggcagatgacagactgggaagtgaccggaaagtttcttttatcaactacttt
gatccgaaggacacactggtgttcctggatgaaccagcaaggcttctggaaaaagggcgt
ctggcagaaaatgaagtggaaaaagcgagagagaaccgtgcagaagaaatggaaaggacc
ggggaaatggaagaagctccggaattttttacgactgatgaaattataaaatttctgaac
aaattctgtatgatcgggatgtgtgctctggaaatgaaatgtaagccattttttgtgaaa
aagcggtttgggatccaggcaaaaagcgttaacccgtataacagcagctttgagatgctg
acacaggatctcaaaagactgaaaaggaacggataccgggcggttctgatttctgggtcc
agaacaagggcaaaacgtctggcagaggatctacgtgattatgatctgagcagtttttac
agtgaggatcaggaacgagaagtgaatccaggggagatcatggtatgctacgggcatata
gaagtcggatacgagtacccgatgattaaatttattgtcatatctgagtcagatattttt
ggaaagacaaagaagaaaaagaaacgaaaaagttatgatggacagaaaataagcagcttt
tcggatctgaaaccgggagactatgtagtgcatgagaatcatggacttggaatctaccgg
ggaattgaaaagatagaagttgataaggtgacaaaggattatatgaagatttcgtatgct
gatggtggaaatctttatattcttgcgacacagcttgaccagatccagaagtatgccagt
gcagatgctaaaaagccgaaacttaacaaacttggaggacaggaatggcatcgcacgaag
agcaaggtaaagacagcagtctggcagattgccaaagatctggtggaactctatgcagta
cggcagtccaaagaaggatttgtctatgaaaaggacacggtctggcagaaagaatttgaa
gaaatgtttccgtttgaggaaacggaggatcaacagcttgcaatcgaggcaacaaaacgg
gatatggaaagcccaaagatcatggaccgtctgatctgtggggatgtgggatttggaaag
acagagattgcaatccgggcagcattcaaggcagtgcaggagaacaagcaggttgtctat
ctggtccctactacgattcttgcacagcagcattacaacacttttgtgcaacggatgaaa
gaatttccggtaagggtggatctgttatgccgtttccgcacacctgcacaacagaaaaaa
acgatcgaagatttgaaaaagggacaggttgatatcatcatcggaacccaccgggtattg
agtaaggatgtggcatttaaagatctgggacttctgatcattgatgaggaacagcgtttt
ggagtacagcataaagaaaagatcaaaaagctgaaggaaaatattgatgttctgacactt
acggcaacaccgattccccgaacgcttcatatgagtctgatcggaatccgtgacatgagt
gtgctggaagaagcaccagttgaccggatgccgatccagacctatgtgatggaggagaat
gatgagatggtccgggaggcaatcgaaagagaaatttcccgccagggacaggtgtactat
gtctataaccgtgtccaggatatagctgaaatggcagcgaagatccagaaacttgtgccg
gatgcaaatgtggcatatgcacacgggcagatgcgggaacacaagttagaagatattatg
tacgatttcatcaatggagaaattgatgttctggtatcgacgacgatcatcgagaccggt
cttgacatttccaatgccaataccatgatcatccatgatgcagatcggatggggctctcc
cagctttatcagctacgtggaagagttggaagatcgaaccgtatggcatatgcatttctt
ttgtacagaagagacaaaatgctccgggaggttgcagaaaaacgtctttcggcaattcgt
gagtttacagatcttggctctggtgtaaaaatcgccatgcgggatctggaaatccgtggg
gcaggaaacctgcttggggaggaacagcatggacatatggatgcagtgggatacgatctt
tactgtaagatgttaagtgaggcagtccgtcacctgaagggagaaatcccggaagaaacc
tatgcgacaaccgtggatctgaatattgatgcttatattccggcatcttatattccgaat
gagtatcagaaactggatatctataaacggatcgcagcaattgagacagaagaagaacag
gaagatatgctagaagaactgattgaccgtttcggcgatccgccacgcaaggtgcagcag
cttctgatgatcgcgcagctgaaggcgaaagcacatgcggcttatgtaatttcggtagag
caaaaaggcgatgaatacaaatttaccatgtatgagaaggcaagggtaaatgtagcaaag
attccggaactgctggcaaaatataagggagaactgacatttaagacagatgcagaaaat
ccatattttatttattgtaaacttcggaaaaataaaaaagaaaaagcagagcagattctt
gaaaatgcaggaaaaattgtcgaagatatacagggacttgtcgaagaataa
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integrated database retrieval system
