Cronobacter condimenti: AFK62_07775
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Entry
AFK62_07775 CDS
T04060
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ccon
Cronobacter condimenti
Pathway
ccon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK62_07775 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccon03019
]
AFK62_07775 (rne)
03009 Ribosome biogenesis [BR:
ccon03009
]
AFK62_07775 (rne)
Enzymes [BR:
ccon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AFK62_07775 (rne)
Messenger RNA biogenesis [BR:
ccon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AFK62_07775 (rne)
Ribosome biogenesis [BR:
ccon03009
]
Prokaryotic type
rRNA processing factors
AFK62_07775 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ALB62409
UniProt:
K8AD87
LinkDB
All DBs
Position
complement(1694504..1697662)
Genome browser
AA seq
1052 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPASYASHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKREAITAIETRQGGVRCVIVPNDQME
TPHYSVLRVRKGEETHTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFVMPDVPPA
PPESSAPKAAAPVAQPTPAQAPAKEGFLSRAISALKSLFASEPQVQPAASEPEQQPAKNR
DEKQQERRNGRRQNNRRDRNDRNDRSDRGERPSRDNRDNRDNSEAREENRRNRREKQQQN
AEVRESRAPVAEDAAEKPKARDEQQSPRRDRNRRRSEEKRQAQQEVSELNRDEAVEETEQ
EDRVVQVMPRRKPRQLSQKVRIESVSDVIEQAEAPAPVAETQQEDTAPLALPANVEAPAA
SDENAHSGSENAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASG
KVWIRYPLPRAQEQDEQQTLEQNTAPVAETSTVTAPVEPVAEAVVVEPSVAESAPQAPVV
ETTHPEAIEAPVDAQPQLIEPQDQAVAEQVAQEAVAADAPVADDATRVNAAAEMAESAPS
QEPQPQAIADEPVKAPEAAPATEAKAPVIEVKAPVVASAPMTRAPAPDYVPEPPRHSDWV
RPTFEFSGKGSAGGHSATQQASAPATRPQPVE
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcaggaagagttgcgcgtcgccctcgtggat
gggcaacgtctgtacgacctggatatcgaaagtcctggacacgagcagaaaaaagcgaac
atctacaaaggcaaaattacccgcattgaacccagtctcgaagccgcatttgttgattat
ggcgccgaaagacacggtttcctccctttaaaagaaatcgcccgcgaatacttccctgcc
agctatgcctctcatggtcgtccgaacattaaagatgtcttgcgcgaaggccaggaagtc
atcgttcagatcgataaagaagaacgtggcaacaaaggcgcggcgctgacaacttttatc
agccttgcgggcagttacctcgtgctgatgccgaacaatccacgtgcaggcggtatctct
cgccgtattgaaggtgacgatcgcaccgagcttaaagaagccctttccagcctcgaactg
cctgacggcatggggttgattgtgcgcaccgcaggcgttggtaaatctgccgaagcgctg
cagtgggatttaagcttccgccttaagcactgggaagccattcaaaaagccgctgaaaac
cgtccggcaccgttccttatccatcaggaaagtaacgttatcgtacgcgcgttccgcgac
tatcttcgtcaggacatcggcgaaatccttatcgataacccgaaagtgcttgagctggcc
cgtcagcacatcgccgcgctgggtcgtccggatttcagcagcaaaattaagctctacacc
ggtgaaattccgctgttcagccactatcaaattgaatcccagattgagtcagccttccag
cgcgaagtacgtctgccgtccggcggctcgattgttatcgacaccaccgaagcgctgacc
gcaatcgatatcaactccgcacgcgcaacccgcggcggcgatatcgaagaaaccgcgttc
aacaccaacctggaagcggcagatgaaatcgcccgtcagctgcgcctgcgcgacttaggc
ggtctgatcgttatcgacttcatcgatatgaccccggtacgccatcagcgcgcggtagaa
aaccgcctgcgcgaagccgtacgacaggaccgcgcgcgtattcaaatcagccatatttcc
cgctttggtctgctggagatgtcccgccagcgcctgagcccgtcgcttggcgaatccagc
catcatgtctgcccgcgttgtagcggcaccggcaccatccgcgataacgaatctctgtcg
ctttctattctgcgtctgattgaagaagaagcgctgaaagagaacacgcaggaagttcac
gctatcgttcccgtgcctatcgcctcttatttgctcaacgaaaagcgcgaagccattacg
gctatcgaaacgcgccagggtggcgtgcgctgcgtgatcgtgccaaacgatcagatggaa
actccgcactactccgtgctgcgcgtgcgtaaaggcgaagagacccatacgctaagttac
atgctgccgaaactgcatgaagaagcgatggcgctgccgtctgaagaagaatacgccgag
cgtaaacgtcctgagcagccggcactggctaccttcgtcatgccagacgtgccgccagcg
ccgccagaatccagcgccccgaaagccgccgcaccggtagcccagccgacaccagcgcaa
gcgcctgcgaaagaaggcttcctgagccgcgctatcagcgcgctgaagagcctgttcgcc
agcgaaccacaggtacagcctgccgcaagcgagccggaacagcagccagcgaaaaaccgc
gacgagaagcagcaagagcgtcgtaatggccgccgtcagaataatcgtcgcgatcgcaac
gaccgtaatgatcgcagcgaccgtggcgagcgtccgtcccgtgataatcgcgataaccgt
gacaacagcgaagcgcgcgaagagaaccgccgtaaccgccgtgagaaacagcagcagaac
gccgaagtgcgtgaaagccgcgcgccggttgcggaagatgccgctgagaaaccaaaagca
cgtgacgagcagcagtcacctcgccgcgatcgcaaccgtcgccgctctgaagagaaacgt
caggcgcagcaggaagtcagcgagctgaaccgtgacgaggctgttgaagagaccgaacag
gaagatcgcgttgttcaggtgatgccgcgccgtaaaccgcgtcagctgagccagaaagtg
cgtatcgaatcggtatcggatgttattgagcaggccgaggcgccagcaccggttgccgaa
acgcaacaggaagacactgccccactggcgctgccagcgaatgtggaagcgccagctgcc
tctgacgagaacgcccactccggcagtgagaacgccggtatgccgcgtcgttcacgtcgc
tctccgcgtcacctgcgtgtcagcggccagcgccgccgtcgctatcgtgacgagcgttac
ccgacacagtcgccgatgccgctgaccgtcgcatgcgcgtcgccggagatggcctctggt
aaagtctggatccgctacccactgccgcgtgcgcaggagcaggatgagcagcagacgctg
gagcagaacaccgcgccggtcgctgaaacctcaacggtaaccgcgccggttgaaccagtc
gctgaagccgtagtagtggagccgtcggttgcagaaagcgcgccgcaggcgccggtcgtg
gaaacgacccatcctgaagcgatcgaagcaccggttgacgcacagccgcagctcatcgag
ccgcaggatcaggccgtcgccgaacaggttgcgcaggaagccgttgcggctgacgcgccg
gttgctgatgacgccacccgcgttaacgccgccgctgagatggcagaaagcgcgccgtcg
caggaaccgcagccgcaagccatcgctgacgaaccggtaaaagcgcctgaagccgcaccg
gccactgaagcgaaagcaccggttatcgaagtgaaagcgcctgtcgtcgcttctgcgccg
atgacccgcgcaccggcaccggactatgtgcctgagccgccgcgtcacagcgactgggtt
cgcccgacattcgagttcagcggtaaaggttcagcgggcggccacagcgccacccaacag
gcctcagcccctgcaacgcgtcctcagccggtggagtaa
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