Cronobacter condimenti: AFK62_07925
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Entry
AFK62_07925 CDS
T04060
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccon
Cronobacter condimenti
Pathway
ccon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFK62_07925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccon03400
]
AFK62_07925
Enzymes [BR:
ccon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFK62_07925
DNA repair and recombination proteins [BR:
ccon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AFK62_07925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALB62438
UniProt:
K7ZZI7
LinkDB
All DBs
Position
complement(1724940..1728386)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGAACAVEVAEMAERHAGPLVLIAPDMQNALRLHDEIQ
QFTDSMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPGMQRGVLILPVNTLMQRVCPH
SFLHGHALVMNKGQQLSRDTLRTQLDQAGYRHVDQVMAHGEYATRGALLDLYPMGSEQPY
RIDFFDDEIDSLRLFDVDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDRFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPALFSYFPKNTLVVSTGDLEASADRFWADAV
ARFENRGVDPMRPLLPPEELWLRTDELYAQLKAWPRVQLNTEPLAEKAAHTNLGYQPLPD
IAVQAQQKAPLDSLRRFLESFTGPVIFSVESEGRREALSELLARIKVAPKRLLRLDDAED
GGRYLSIGAAERGFIDTLRHRAFICESDLLGERVTRRRQESRRTINPDTLIRNLAELRPG
QPVVHLEHGVGRYAGLTTLEAGGITAEYLMLTYASDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGGDAWSKARQKAAEKVRDVAAELLDIYAQRAAKTGFAFKHDKEQYRLFCEGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAAEGKVDILIGTHKLLQSDVKM
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDTLVVREAILREVLRGGQVYYLYNDVENIQKAAERLANLVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPEAFIPDV
NTRLSFYKRIASAKKEQELEEIKVELIDRFGLLPDPARNLLDIAALRQQAQKLGVRKIEA
NEKGGTIEFAEKNHIDPGWLIGLLQKEPQHYRLDGPTRLKFFRELEERKNRMEWVRQFMA
QLAEHTLP
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttactctctgcccgtcaaagcgggcgatcagcgtcaactgggt
gaactgaccggcgcggcctgcgccgtcgaggtggcggaaatggcggaacgccacgccggc
ccattggtgcttatcgcgccggatatgcaaaatgccctgcgtctgcacgatgaaattcaa
cagtttactgacagcatggtgatgaacctggccgactgggagacactgccttatgacagc
ttctcaccacatcaggaaatcatctcctcgcgtctgtctacgctctatcagctacccggc
atgcagcgcggcgtgcttatcctgccggtgaataccctgatgcagcgcgtctgtccgcac
agctttttgcacggccacgcgctggtcatgaataaaggccagcagctctcacgcgatacg
ctgcgcactcagcttgaccaggcgggttaccgccatgtggatcaggtgatggcgcatggc
gaatacgctacccgcggcgcgctgcttgatctctatccgatgggcagcgaacagccttac
cgcatcgactttttcgatgacgaaatcgacagtctgcgtctgttcgacgtcgacacccag
cgcacgctggaagaagtcgacgcgataaacctgctgcccgcgcacgaattcccgacagac
aaaacggccattgaattattccgaagccagtggcgcgaccgtttcgaggtcaaacgcgat
ccggaacatatttatcagcaggtcagtaaaggcaccctccccgccggcattgagtactgg
caaccgctctttttcagcgagccactgccggcgctctttagctatttcccgaaaaacacg
ctggtggtgagcaccggcgatcttgaggccagtgccgaccgtttctgggccgatgccgtc
gcgcgttttgaaaaccgcggcgtcgatccgatgcgtccgttgttaccgcccgaagagctt
tggctgcgcacggatgaactttatgcccagttaaaagcctggccgcgggtgcaactgaac
accgagccgctggcagaaaaagccgcgcataccaatcttggttatcagcctctgccggat
atcgccgtccaggctcagcagaaagcaccgctcgacagcctgcgccgtttccttgaatcg
tttaccgggccggtgattttttctgttgagagcgagggccgccgcgaggcgctctcggaa
ttgctcgcacgcattaaagttgcgccgaagcgtcttctgcggcttgacgatgccgaagac
ggcgggcgttatctgagcatcggcgcggcggaacgcgggtttatcgacaccctgcgccac
cgcgcctttatctgcgaaagcgatctgctgggcgagcgcgtgacgcgccgccgtcaggag
agccgccgcaccattaaccccgatacgcttattcgcaacctggcggagctgcgccccggc
cagccggtggtgcatctggagcacggtgtgggccgctatgcgggactgacgacgcttgag
gcaggcggcatcacggcggaatacctgatgctgacttacgccagcgacgccaaactttac
gtgccggtgtcgtcgctgcatctgattagccgttacgcgggcggggcagaagataacgcg
ccgctgcataagcttggcggcgacgcgtggagcaaagcacgccagaaggcggcggagaaa
gtacgcgatgtggcggcggagctgctggatatctacgcgcagcgcgctgcgaaaacgggc
ttcgcctttaagcatgacaaagagcagtaccggctgttctgcgaaggtttcccgtttgaa
accacaccggatcaggcacaggccatcaacgcggtgctgagcgatatgtgccagccgctg
gcgatggaccgtctggtctgcggcgatgtcggcttcggtaaaacggaagtggcgatgcgc
gcggcgtttctcgcggtcgataacaacaagcaggtcgcagtgctggtgccaaccaccctg
ctcgcccagcagcattacgataatttccgtgatcgcttcgccaactggccagtgcgcatt
gagctgttgtcgcgttttcgcagcgccaaagagcaggcacaggtgctggaacaggccgca
gaagggaaagttgatattcttatcggcacccataagttgttgcaaagcgacgtcaaaatg
aaagacctcggtctgctgattgtcgatgaagagcaccgttttggcgtgcggcataaagag
cgcatcaaggcgatgcgcgccgatgtggatattctgacgctcaccgcaacgccgattccg
cgaacgctgaacatggcgatgagcggcatgcgcgatctgtcgattatcgccaccccaccc
gcgcgtcgtctggcggtcaaaacctttgtgcgcgagtatgacactctggtcgtgcgtgag
gccatcctgcgtgaggtgttgcgcggcggccaggtctattacctctataacgatgttgaa
aatattcagaaagccgccgagcgactggcgaatctggtgccggaggcgcgtatcgccatc
ggtcacggccagatgcgcgagcgcgagctggaacgggtgatgaatgatttccaccatcag
cgctttaacgtgctggtctgtaccacgataatcgaaaccggtatcgacattccgaccgct
aacacaattatcattgaacgtgccgaccactttggccttgcgcaactgcaccagttgcgt
ggtcgtgtcggccgttcgcaccaccaggcgtatgcgtggctgttgacgccgccgccaaaa
gcgatgaccaccgacgcgcagaaacgcctggaggcaatcgcctcgctggaagatctcggt
gcgggctttgcgctcgctacgcacgatctggagattcgtggcgcaggcgaactgctgggc
gaagatcagagcggacagatggaaaccatcggtttctcgctctatatggagctgctggaa
aacgcggtcgacgccctgaaagccgggcgtgagccgtcacttgaagatctcaccagccaa
cagactgaagtagagctgcgcatgccgtcgctgctgccggaggcctttattccggacgtc
aatacgcgtctgtcgttctataagcgcatcgccagtgctaaaaaagaacaggaactcgaa
gagatcaaagtggagctgattgaccgcttcggcctgctgccggacccggcgcgcaatctg
ctggatatcgccgcgctgcgccagcaggcgcagaaacttggcgtgcgtaaaatcgaagcc
aatgagaaaggcggcacgattgagtttgccgagaagaaccatatcgatccgggctggctt
atcggtcttctgcaaaaagagccgcaacattaccgcctcgacggcccgacgcgtctgaaa
ttcttccgcgagctggaagagcgcaaaaaccgcatggagtgggtgcgtcagtttatggcg
caacttgctgaacatacccttccctga
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