Cronobacter condimenti: AFK62_10205
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Entry
AFK62_10205 CDS
T04060
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ccon
Cronobacter condimenti
Brite
KEGG Orthology (KO) [BR:
ccon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccon03019
]
AFK62_10205
Enzymes [BR:
ccon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AFK62_10205
Messenger RNA biogenesis [BR:
ccon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AFK62_10205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
nSTAND3
T2SSE
ResIII
PhoH
NTPase_1
AAA_16
HALZ
SLFN-g3_helicase
MCM
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
ALB62853
LinkDB
All DBs
Position
complement(2231636..2235538)
Genome browser
AA seq
1300 aa
AA seq
DB search
MMEKQIITLSALTTRLDDLMLRDKSRFARRLHGARKIKNTESQQALFEQLSQEMTEAAGK
VLLREAARPAITYPENLPVSQKKQDILNAVRDNQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGREGPGDILIFMSGE
REIRDTADGLMKLNLPHTEVLPLYARLSNSEQNRVFQSHAGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATVYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPLDKQQA
SDEKHRRFHDKESDFQAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAGYREVHTALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWAMVAELVETSRLWGRIAARIDPEWIEPVAQHLIKRSYSEPHWERGQGAVMASE
KVTLYGLPIVAARSVNYSQIDPILSRELFIRHALVEGDWQTRHAFFRENQRLRAEVEELE
HKSRRRDILVDDDTLFEFYDQRIGHEAISARHFDTWWKKASRDTPDLLNFEKSMLIKEGA
EKVSKLDYPNFWHQGNLKLRLTYQFEPGGDADGVTVHIPLPLLNQVEEAGFEWQVPGMRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLFDALERELRRMTGVTIDREAW
QAEQVPDHLKMTFRVVDEKGRKLREGKDLSALKEGLKEKVQETLSAVADDGIEQSGLHIW
SFGALPERYEQKRGGYQVKAFPALVDEKESVGIRLFDNPQEQQHAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIAEHGGPVWTQEGFTQLHEN
VRAQLNDTVVDIARQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMSGLVYRGFVTG
NGYKRLGDTLRYLNAIEKRLEKMAVDPHRDRAQMLKVEAVQQAWQQWLNKLPPARRDEDD
VQEIRWMIEELRVSYFAQQLGTPYPVSDKRVLQAMEQVGG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaaaacaaattattacgctctccgccctgacgacgcgtcttgacgatttgatg
ctgcgcgataaaagccgcttcgcacgtcgtctgcatggggcaagaaagattaaaaatact
gaatctcagcaggcgcttttcgaacagctttcccaggagatgaccgaggcggcagggaaa
gtcctgctgcgcgaagccgcacgacctgccatcacctacccggaaaacttgccggtcagc
cagaagaaacaggatattctcaacgcggtacgcgataaccaggtggttatcgtggcgggt
gaaaccggctccggtaagacgacacagctgcctaaaatctgtatggaactgggccgcggc
gtgaaagggctgattggccacacgcagccgcgccgtcttgcggcgcgtactgtcgccaac
cgtatcgccgaagagctgcaaaccgagccgggcggatgcgtaggctacaaagtgcgcttt
agcgatcacgtcagcgacaacacgatggtcaagctgatgaccgacggcattctgctggcg
gagatccagcaggaccggctgctgatgcagtatgacaccatcattatcgatgaggcgcat
gagcgcagcctgaatatcgatttcctgctgggctacctgcgtgaactgctgccaaagcgt
cccgatcttaaaattatcattacgtcagcgaccatcgacccggagcgtttctcacgtcac
ttcaataacgcaccgattatcgaagtctccgggcgcacgtacccggtagaagtgcgttat
cgcccgattgttgaagacgcagacgacaccgagcgcgatcagctccaggcgattttcgac
gctgtcgacgaactgggccgcgaagggccgggcgatatcctgatctttatgagcggcgag
cgcgaaattcgcgacaccgccgatggcctcatgaaactgaatctgccgcataccgaggtg
ctgccgctttacgcgcggctctccaacagcgagcagaaccgggtgtttcagtctcatgcc
gggcggcgtatcgtgcttgccactaacgtggccgaaacatcgctcacggtgccgggcatt
aaatatgtgattgatccgggcacagcgcgtattagccgctacagctatcgcaccaaagtg
caacggttgcctatcgagccggtctcccaggcctcggccaaccagcgtaaaggccgctgc
gggcgcgtctcggaaggtatctgtattcgtctttattccgaagacgatttcctctcacgc
ccggccttcaccgacccggagatcctgcgcactaatctggcgtccgtcattctgcaaatg
accgcgctggggcttggtgatatcgcggcgttcccgtttgtcgaagcaccggataagcgc
aacattcaggatggcgtgcgcctccttgaagagcttggggccattaccaccgacgaacag
gcgacggtgtacaagctgacgccgatgggccgccagctcagtcagctgccggtggacccg
cgtctggcgcgtatggtgctggaggcgcaaaaacatggctgcgtgcgcgaggcgatgatt
atcacctccgccctgtcgattcaggatccgcgcgagcggccgctcgataaacagcaagcc
tcagatgaaaaacatcgccgtttccacgataaagagtccgatttccaggccttcgtgaat
ctgtggaactatcttggcgagcagcaaaaagcgctctcctcaaaccagttccgccgcctg
tgccgtactgactatctgaactatctgcgcgtgcgcgaatggcaggatatctatacccag
cttcgccaggtggtgaaagagcttggtattccggttaacagcgaaccggcgggttaccgc
gaggtgcatacggcgctgctgactggtctactgtcgcatatcggcatgaaggacgccgat
aaacaggagtacaccggtgcgcgcaacgcccgtttctctattttcccaggctccgggctt
ttcaaaaagccgccgaagtgggcgatggtggcggagctggttgaaaccagccgcctgtgg
ggacgcatcgccgcgcgtatcgatccggagtggatcgagccggtagcgcagcatcttata
aagcgctcttacagcgagccgcactgggagcgcgggcagggcgcggttatggcgagcgag
aaagtcacgctgtacggcctgccgatagtcgctgcgcgaagcgtgaactacagccagatt
gacccgatactgagccgtgagctgtttatccgtcatgcgctggtggaaggcgactggcag
acccgccacgcgttcttccgtgaaaaccagcgactgcgcgccgaagtggaagagctggag
cataaatcgcgccgccgcgacattcttgtggatgatgacacgctgtttgagttctatgac
cagcgcatcggccacgaggcgatttccgctcgccatttcgatacctggtggaaaaaggcg
agccgcgacacgccggatctgcttaatttcgaaaagagcatgctgattaaagagggcgcg
gagaaagtcagtaagctcgactacccgaacttctggcatcagggcaacctgaagctgcgc
ctgacctaccagtttgagccagggggcgatgccgacggcgtgacggtgcatattccgctg
ccgctgttaaatcaggtggaagaggcgggcttcgaatggcaggtgccgggaatgcgccgc
gagttgattattgcgcttatcaaatcgttgcctaaaccggtgcgccgtaattttgtgccc
gcgccgaactatgccgaagcgtttttggggcgtgtgacgccgcttgaactgccgcttttt
gacgcgctggagcgcgaattgcgccgcatgaccggcgtcaccatcgaccgagaggcgtgg
caggccgaacaggtgcccgatcacctgaaaatgaccttccgcgtggtggatgagaaagga
cgcaaactgcgcgagggcaaagatctcagcgcgcttaaagaagggctgaaggaaaaggta
caggagacgctgtctgcggtggcggatgacggtattgaacagagcgggctgcatatctgg
agtttcggcgcgctgccggagcgctatgaacagaaacgcggcggctaccaggtgaaagcc
ttcccggcgctggtggatgagaaagagagcgtcggcattcggctgtttgataatccgcag
gagcagcaacacgccatgtggcgcgggctgcgtcggctgttattgctgaacattccgtcg
cccattaaatacctgcacgagaagctgccgaacaaagcgaagcttgggctttacttcaac
ccgtacggtaaggtgctggatctcatagacgactgtatctcctgcggcgtcgataaactg
attgcggagcacggcgggccggtatggacgcaggaaggcttcacgcagttgcatgagaac
gtgcgcgcgcagctgaacgacaccgtggtagacatcgcaagacaggtggagcagatcctg
actgcggttttcaatatcaacaaacgtctgaaagggcgagtggatatgacgatggcgctc
gggctttcagatatcaaagcgcagatgagcgggcttgtgtatcgcgggtttgtgaccggc
aacgggtacaaacgcctgggtgacacgctgcgttatcttaacgcgattgaaaaacgcctt
gagaaaatggccgtcgatccgcaccgcgaccgcgcgcagatgctgaaagtggaggccgtg
cagcaggcctggcagcaatggcttaacaaactgccgcctgcacgacgcgacgaggatgac
gtgcaggagatccgctggatgattgaggagctgcgcgtaagttatttcgcccagcagctc
ggtacgccataccctgtttccgacaaacgtgtgttgcaggcgatggagcaggtgggcgga
taa
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