Cronobacter condimenti: AFK62_16110
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Entry
AFK62_16110 CDS
T04060
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ccon
Cronobacter condimenti
Pathway
ccon03410
Base excision repair
ccon03430
Mismatch repair
ccon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AFK62_16110
03430 Mismatch repair
AFK62_16110
03440 Homologous recombination
AFK62_16110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccon03400
]
AFK62_16110
DNA repair and recombination proteins [BR:
ccon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AFK62_16110
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AFK62_16110
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AFK62_16110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ALB63927
UniProt:
K8A978
LinkDB
All DBs
Position
complement(3529239..3530972)
Genome browser
AA seq
577 aa
AA seq
DB search
MTKQTQLRRRSPDETLALPDTLPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGIDDA
VAMLHNALREGLRIIVVGDFDADGATSTALSVLALRALGGSNVAYLVPNRFDDGYGLSPE
VVDQAHARGAQMILTVDNGISSHAGVARAHELGIPVLVTDHHLPGDTLPAAGAIINPNLA
ECTFPSKSLAGVGVAFYLMLALRAHLRSVGWFVEKGLPEPNLAEFLDLVSLGTVADVVPL
DANNRILIWQGLSRIRAGKCRPGIRALLEIANREAHRLTASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARMLANELDALNQTRKEIEQGMQAEALTLCQQLERSGETLPSGIAI
FHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGTLKGSGRSVQGLHMRDALERLDTLYP
GMMLKFGGHAMAAGLSLEEARFPEFQARFAALVNDWLDPAMLQGEIWSDGALAPQEMTLD
VAEMLRDAGPWGQMFPEPLFDGRFRILQQRLVGERHLKLMLEPVGGGPLLDGIAFNVDTT
CWPDPGVREVELAYKLDVNEFRGNRSLQLIIDHLWPV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgactaaacagacgcaacttcgcaggcgttccccggatgaaaccctggcgctaccggac
actttaccgccgttgctgcgcaggctctacgccagccgtggcgtgcgcagcgcccaggag
ctggagcgcagcgtaaaaggtatgctgccctggcagcaactgagcggcattgacgatgct
gtcgccatgctgcacaacgcgctgcgtgaagggctgcgcattatcgttgtgggcgatttt
gacgccgacggtgcgaccagcactgcgcttagcgtgctggctctgcgcgcgcttggcggc
agtaatgtggcgtatctggtgcccaaccggtttgatgacggctatggcctcagcccggaa
gtcgtcgatcaggcgcatgcgcgcggcgcccagatgatcctgacggtggataacggcatt
tcatctcatgcgggggtagcgcgtgcccatgaactgggtattccggtactggtcaccgat
caccatttgccgggggatacgctgcctgctgcgggtgcgatcattaaccccaacctggcg
gagtgtactttcccgtcgaaatcgctcgcaggcgttggtgtcgccttttacctgatgctc
gcgctacgtgcgcatttgcgaagcgtcggctggtttgtggagaaaggccttcctgagcct
aatctcgcggagtttctggatctcgtgtcacttggcaccgtggcagatgtggtgccgctg
gatgccaataaccgtattcttatctggcagggcttaagtcgtattcgcgccggaaaatgc
cgtccaggcattcgtgcgctgcttgagatagccaaccgcgaggcgcatcgcctcacggca
agcgatctcggctttgcgcttggtccgcggcttaacgcggctggccggctggatgatatg
tccgtcggtgtggcgttattgctgtgcgataacattggcgaagcccgaatgcttgctaat
gaactggacgcgctaaaccagacccgcaaagagattgagcaggggatgcaggcggaggcg
ttgacgctgtgccagcagttagagcgcagcggtgagactttgccgagcggtattgcgatc
ttccatccagaatggcatcagggcgtggtgggtattcttgcctcgcgtatcaaagaacgc
tttcaccgcccggttatcgcgttcgcgcctgcgggcgaggggacgctaaaaggctcgggc
cgctctgtccaggggctgcacatgcgcgacgcgctggagcggcttgatacgctctacccc
ggcatgatgctgaagttcggcggccacgcgatggccgcagggctgtcgcttgaagaagcg
cgttttcctgagtttcaggcgcgcttcgcggcgcttgtcaacgactggcttgatccggcg
atgctacagggcgaaatctggtctgatggcgcgcttgcaccgcaggaaatgacgctcgac
gtcgccgaaatgctccgcgacgcgggcccgtggggacagatgttcccggaaccgctgttc
gacgggcgttttcgtattctccagcagcgtctggtgggcgagcggcatcttaagcttatg
ctggagccggtcggcggcgggccattgcttgacggcatcgcgtttaacgtcgacaccacc
tgctggcccgatccgggcgtgcgcgaagtggagcttgcctataagcttgatgtgaacgag
tttcgcggcaatcgcagcctgcaattaattatcgaccatctctggcctgtttag
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