Cronobacter condimenti: AFK62_16585
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Entry
AFK62_16585 CDS
T04060
Name
(GenBank) RNA polymerase subunit sigma
KO
K03086
RNA polymerase primary sigma factor
Organism
ccon
Cronobacter condimenti
Pathway
ccon02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccon00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AFK62_16585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccon03021
]
AFK62_16585
Transcription machinery [BR:
ccon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AFK62_16585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
ALB64019
UniProt:
A0ABM5VGD7
LinkDB
All DBs
Position
3630226..3632070
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEESDDDSSDDDNSIDPELAREKFGELRTQYEVTRDTIKAKG
RSNAASQEEILKLSEVFKQFRLVPKQFDYLVNSMRTMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEDVHRGLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagcttcttgtcacccgtggtaaggagcagggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaacgatatgggcatccaggtgatggaagaagcaccg
gacgccgacgatctgttgcttgctgaaaactcgaataacaccgacgaagatgcggaagaa
gcggctgcgcaggtgttatccagcgtggaatctgaaatcgggcgcaccaccgatccggtt
cgcatgtacatgcgtgaaatgggtaccgttgagctgctgactcgcgaaggcgagatcgac
atcgctaaacgcatcgaggacgggatcaaccaggttcagtgctccgtcgccgaatacccg
gaagcgatcacctatctgctggagcagtacgatcgcgtggaagcgggcgaagcgcgcctt
tccgatctgatcaccggttttgtcgatccgaatgccgaagaagatatggcccctacggcg
acgcacgtcggctctgaactctctcaggaagagatggatgatgacgaagacgaagacgaa
gagtctgacgacgacagcagcgacgacgacaacagtatcgacccggaactcgcgcgcgag
aagtttggcgaactgcgtacgcagtacgaagtgacccgcgacactatcaaagccaaaggt
cgcagcaacgcggcgtctcaggaagagatcctgaagctttctgaagtgttcaaacagttc
cgtctggtgccgaaacagttcgattacctggtaaacagcatgcgtaccatgatggaccgc
gtgcgcacccaggaacgcatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaag
aagaacttcatcaccctcttcaccggcaacgaaaccagcgaaacctggttcaatgcggcc
atcgctatgaacaaaccgtggtctgaaaagctccacgacgtggcggaagatgtgcaccgc
ggcctgcaaaaactgcagcagattgaagaagaaactggcctgactatcgaacaggtgaaa
gacatcaaccgtcgcatgtctatcggcgaagcgaaagcccgtcgagcgaagaaagagatg
gttgaagcgaacctgcgtctggttatttctatcgccaaaaagtacaccaaccgtggtctg
caattcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagacaagttc
gaataccgccgcggctacaagttctccacctatgcgacctggtggatccgtcaggctatc
acccgttctatcgcagatcaggcgcgcaccattcgtattccggtgcatatgattgagacc
atcaacaagctcaaccgtatttcacgccagatgctgcaggagatgggccgcgagccgacg
ccagaagagctggctgaacgcatgctgatgccggaagacaaaatccgcaaagtgctgaag
atcgctaaagagcctatctccatggaaacgccgattggcgacgatgaagattcgcatctg
ggtgatttcatcgaggataccacccttgagctgccgctggattctgcgaccaccgagagc
ctgcgtgccgccacgcacgacgtcctggccggccttaccgcgcgtgaagccaaagtactg
cgtatgcgtttcggtatcgacatgaacaccgaccatacgctggaagaagtgggtaaacag
tttgacgtaacccgcgaacgtatccgtcagatcgaagcgaaggcgttgcgtaagctgcgt
cacccgagccgttctgaagtgctgcgcagcttcctggacgattaa
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