Cronobacter condimenti: AFK62_17455
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Entry
AFK62_17455 CDS
T04060
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ccon
Cronobacter condimenti
Pathway
ccon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK62_17455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccon03019
]
AFK62_17455
03016 Transfer RNA biogenesis [BR:
ccon03016
]
AFK62_17455
Enzymes [BR:
ccon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AFK62_17455
Messenger RNA biogenesis [BR:
ccon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AFK62_17455
Transfer RNA biogenesis [BR:
ccon03016
]
Prokaryotic type
tRNA degradation factors
AFK62_17455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ALB64182
UniProt:
K8A2Q4
LinkDB
All DBs
Position
complement(3798183..3800651)
Genome browser
AA seq
822 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELASELGIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLQKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDIVLAQPLGSDRKGRREARIVRVLVPKQSNIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEIMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIAHLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDDEAHKRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDEDLRSQYQPLVKHLEELHLLYKALEEA
RTERGGISFESEEAKFIFNAERRIDRIEQTQRNDAHKLIEECMILANISAARFVEKNKEP
ALFRIHDRPTNEAITSFRSVLAELGLELPGGSKPEPRDYAELLNSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLLLHRAIKYLLAKQEGHEGNSTESG
GWHYTMEEMLQLGQHCSMTERRADEATREVADWLKCDFMQDQVGQTFSGVISSVTGFGFF
VRLTDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREREKRGGGGGKNRSRRQVGKRQNFEPNDAFRNEKGRGKVKK
ESAARAEKTDKPAKSSKKPSEKTLKIAAATKAKRAAKKKRED
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatccttttcaggaacgagaagctgagaagtacgccaaccctatcccgagc
cgggaatttatcctcgagcatttaacaaaacgtgaaaaaccggctaaccgtgatgaactg
gcgtctgaactcggtattgaaggcgaggagcagctggaagcgctgcgtcgccgcctgcgc
gcgatggagcgcgacggtcagttagtctttacccgccgccagtgttacgcgctgccggaa
cgccttgatctgcaaaaaggcaccgtgatcggccaccgcgacggttacggcttcttacgc
gtcgaaggacgcaaagacgatctctatctctcatccgaacagatgaaaacctgcattcac
ggcgatattgtgctggcgcagccgctgggctccgaccgtaaaggccgccgtgaagcgcgc
attgttcgcgtactggtaccaaagcaaagcaacattgttggacgttatttcacggatgcc
ggtgtcgggtttgtcgtgccggacgacagtcgtctgagctttgatattctcatcccaccg
gaagagattatgggcgcgcgcatgggctatgtggtcgtggtcgaactgacccagcgccca
acccgccgcacgaaagccatcggtaaaattgttgaagtgctgggcgacaacatggggacg
ggcatggccgtcgatatggcgctgcgcactcatgaaatcccttacgtctggccgaaagcc
gtcgaagaacagatcgcgcatctgaaagaagaagtgccggaagaggcgaaagttggccgc
gtcgatttgcgcgacctgccgctcgtcaccattgacggcgaagatgcccgcgactttgat
gacgccgttttctgtgagaaaaaacgcggcggcggctggcgcctgtgggtcgcgattgct
gatgtcagctactacgtgcgtccgccaacgccgctggatgacgaagcgcataaacgcggc
acgtcggtctacttcccgtcgcaggtcgtcccgatgctgccggaagtgctttccaacggc
ctgtgttcgctcaacccgcaggttgaccgtctttgtatggtctgcgaaatgaccatttcc
tccaaaggccgtctgaccggttataaattctatgaagcggtcatgagctcgcacgcccgt
ctcacctacaccaaggtctggcatattctgcagggcgatgaagatttacggagccagtac
caaccgctggtaaaacatctcgaagagttgcacctgctttataaagcgctggaagaagca
cgtaccgagcgtggcgggatctcgtttgagagcgaagaggcgaagtttattttcaacgcc
gaacgccgtatcgatcgcatcgaacagacccagcgtaacgacgcgcacaagctcatcgaa
gaatgcatgatccttgcgaatatctcggcggcgcgctttgtggagaaaaacaaagagcct
gcgctgttccgtattcacgatcgccctaccaatgaggcgatcacctcgttccgctccgtg
ctggcggagctgggcctggagctgccgggcggcagcaagccggagccgcgtgattacgct
gaattgctcaattccattgccgatcgtcccgatcacgaaatgctgcaaacgatgctgctg
cgctcgatgaaacaggctatctatgatccggaaaaccgcggacactttggcctggcgctg
caatcctatgcgcactttacctcgcctatccgtcgttacccggatctcctgttgcaccgc
gccatcaaatatttgctggcgaagcaggaaggccacgaaggcaacagcacagagagcggc
ggctggcactacaccatggaagagatgctgcaactgggccagcactgctccatgactgaa
cgccgtgccgatgaagctacccgtgaggtagcggactggctgaaatgcgatttcatgcag
gatcaggtcggacagactttctccggcgtgatttccagcgtgaccggctttggcttcttt
gtccgtctgaccgatctctttattgatggcctggtgcatgtgtcatcgcttgataacgac
tactaccgtttcgatcaggtcggccagcggcttatcggcgaatccggcgggcagacctat
cgcctgggcgatcgcgttgaagtgaaagtcgaagcggtgaacatggacgagcgcaaaatc
gacttctcgctgatctccagcgagcgcgggccgcgcaacgtgggcaaaaccgcgcgcgag
cgtgagaaaagaggcggtggcggcggcaaaaaccgcagccgtcgtcaggtcggcaagcgc
cagaatttcgagcccaacgacgccttccgtaacgagaaaggtcgtggaaaggtgaagaaa
gaaagcgctgcacgcgctgagaagaccgacaaaccggcgaaaagcagtaaaaaaccgtcg
gagaaaacccttaaaatcgccgccgccaccaaagcgaagcgtgcagcgaagaaaaagcgc
gaagactaa
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