Campylobacter coli OR12: ATE51_01434
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Entry
ATE51_01434 CDS
T04527
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccoo
Campylobacter coli OR12
Pathway
ccoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATE51_01434 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoo03400
]
ATE51_01434 (mfd)
Enzymes [BR:
ccoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATE51_01434 (mfd)
DNA repair and recombination proteins [BR:
ccoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATE51_01434 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
ALU99251
UniProt:
A0A5Z0XCR3
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All DBs
Position
714311..717247
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AA seq
978 aa
AA seq
DB search
MQANFFEYLQDSNIAQLVLCEDDKESFLLSQVALFKDLKTFVLPDFRAEFGDDLRAFSKE
LFELCKVLNAYHKEKDTKILISPLSTILKKLPGQKHLKNYKLSKKNVFNLSEFKNELNKL
GYEFVDMVQDKGEVSIRGEIIDIFCINEELPTRVLLFGDELESIRKFDPMNQKSFPKEYE
ELEICPFLTYFSEENYENFKDKLENFNSDVLINDINSLGFWCIDDFCDYLELDFISIKKF
NQEEWDKDLSKINAKIIPQSSVYKDLKSSYNKDFFSLQQNKKITILAKNEALFKALELEN
TQNISFQKSDLILNLISNQELIISLNHKEKQKYKRKANLIIDELKIGDFIVHEDYGVGKF
LGLEMISISEAKKEFVAIEYQNSDKLLLPVENLYMIDKYLGASGGIPLLDRLGKMTFIRL
KERLKTKLLAIASEIVIMAAKRALIKPKEIKIDYADQAYFVSKAGFSYTQDQNKACEEIL
NDFENGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFFFAPTTLLSHQHYKSLKKRF
EPFGIEVFKLDRFTSTKEKKTLMLNLEQNKACVVIGTHALLNVECENLALVIIDEEHKFG
VKQKEKLKELTQNSHLLSMSATPIPRSLNQALSSIKSYSVLQTPPEDRLDVRTFVKENDD
ALLKEAITRELRRGGQIFYIHNHIASIEQCKKHLLDLFKNLRILILHSKIDAKIQEEEML
KFENKEYDLLLSTSIVESGIDLPNANTMIVERSDRFGMADLHQLRGRVGRSDRQGYCYFL
VENKEELTQDALKRLVSLESNSYLGAGSVLAYHDLEIRGGGNLLGIDQSGHIEQIGLSLY
LKMLEDELNALTKKESFEEKKIDLKLTINAFLNSELINEDRLRLELYRRLSKCKNIDEVY
EIEGEIEDRFGKLDLYTKQFLMLIIIKILALGKFKTISNFEQNIQFVKINDEKEFIKARS
KDDDDIIEAVLTHLRKDK
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcaaatttttttgagtatttacaagattcaaatatagcacaattagtgctttgc
gaagatgataaagaatcttttttgctttctcaagttgctctttttaaggatctaaaaacc
tttgttttacctgattttagagctgaattcggagatgatttaagggctttttccaaggag
ctttttgagctttgcaaggttttaaatgcttatcacaaggaaaaagatactaaaattctt
atttcccctttgtctaccatacttaaaaaattacccggtcaaaaacatttaaaaaattac
aaactttctaagaaaaatgtttttaatttaagtgaatttaaaaatgagctcaacaagctt
ggatatgaatttgtggatatggttcaagataagggtgaggtaagtatacgcggagagatt
attgatatattttgtatcaatgaagaattacctactagggttttgctttttggagatgag
ttagaaagcattagaaaatttgatcctatgaatcaaaaatcatttcccaaagaatatgaa
gaacttgaaatttgtccttttttgacatatttttctgaggaaaattatgaaaattttaaa
gacaaattagaaaatttcaatagcgatgttttgattaatgatattaattctttaggattt
tggtgtattgatgatttttgtgattatttagaacttgattttataagtatcaaaaaattc
aatcaagaagaatgggataaagatcttagcaaaatcaatgctaaaattataccccaatcc
tctgtttataaggatttaaaaagttcttacaataaagacttcttttctttgcaacaaaat
aaaaaaattacgattttggctaaaaatgaagctttgtttaaggctttagagcttgaaaat
acacaaaatatttcttttcaaaaaagcgatttgatccttaatttaattagcaatcaagaa
cttatcatctcattaaatcataaagaaaaacaaaaatataagcgtaaagcaaatttgatt
atagatgagttaaaaattggtgattttatcgttcatgaggattatggtgtgggtaaattc
ttaggtcttgaaatgattagcattagtgaggctaagaaagaatttgttgccattgaatat
caaaatagcgataaacttcttttaccggttgaaaatctttatatgatagataagtattta
ggagctagtggaggcataccgcttttagatcgcttgggaaaaatgacttttatcaggcta
aaagaaaggctaaaaaccaagcttttggctattgcttctgagattgttattatggcggct
aaaagagctttaattaaaccaaaagaaatcaagatagattatgcagatcaagcttatttt
gtttcaaaagctggattttcttatacacaagatcaaaataaggcttgtgaagaaatttta
aacgattttgaaaacggcaaagtgatggatagacttttaagcggtgatgtgggttttggt
aaaaccgaagttgcgatgaatgctatttatcccgtggtaaaaagcggtttttgtgctttt
ttctttgcgcctaccacgcttttatctcatcagcattataagagtttaaaaaagcgtttt
gagccttttggcattgaagtttttaaactggatcgctttacaagcactaaagagaaaaaa
actttaatgttaaatttagaacaaaacaaagcctgcgtggtgattggcacccacgcactt
ttaaatgtagaatgtgaaaatttagcccttgttatcattgatgaggagcataaatttgga
gtaaaacaaaaagaaaaattaaaagaattaacccaaaattctcatcttttatctatgtct
gctactcctataccaaggagtttaaatcaagctttaagctctataaaatcttatagtgtt
ttacaaacccctccagaagataggcttgatgttagaacctttgtgaaagaaaatgatgat
gcgcttttaaaagaggctataacaagagaattaagacgcggcggacaaattttttatata
cacaatcatattgcaagtatagagcaatgtaaaaaacatttacttgatttatttaaaaat
ttaaggattttgattttgcattctaaaattgatgcgaagattcaagaagaagaaatgctt
aaatttgaaaacaaagaatacgatttacttttaagcacttctattgttgaaagcggtatt
gatctgcctaatgcaaacactatgatagtcgaaagaagtgatagatttggaatggctgat
ttgcaccaattacgcggccgtgtaggcaggagtgataggcaggggtattgttatttttta
gttgaaaataaagaagaacttactcaagatgcacttaagcgtcttgtttctttagagagt
aattcttatttaggagcaggttcagttttagcttatcatgatcttgaaattcgcggaggt
ggaaatttgctaggtatcgatcaaagcggacacatagagcaaattggacttagcttgtat
cttaaaatgctagaagatgagttaaatgcacttactaaaaaagaaagctttgaagagaaa
aaaatagacttaaaacttaccatcaatgcttttttaaattcagaacttatcaatgaagat
cgtttaagattggagctttatcgtagacttagtaaatgtaaaaatatagatgaagtctat
gaaattgaaggtgagatagaggatcgctttgggaaacttgatctttatacgaagcaattt
ttaatgctgattataattaaaattttagctttggggaaatttaaaaccataagcaatttt
gagcaaaatatacaatttgtaaagatcaatgatgaaaaagagtttattaaagcaagaagc
aaagatgatgatgatattatagaagcagttttaacccatttaaggaaagataaataa
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