Crateriforma conspicua: Mal65_05130
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Entry
Mal65_05130 CDS
T09863
Symbol
hrpB_2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ccop
Crateriforma conspicua
Brite
KEGG Orthology (KO) [BR:
ccop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccop03019
]
Mal65_05130 (hrpB_2)
Enzymes [BR:
ccop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Mal65_05130 (hrpB_2)
Messenger RNA biogenesis [BR:
ccop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Mal65_05130 (hrpB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
AAA_19
AAA_23
T2SSE
nSTAND3
SLFN-g3_helicase
Flavi_DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QDV61390
LinkDB
All DBs
Position
634859..638818
Genome browser
AA seq
1319 aa
AA seq
DB search
MTFKPESPKLGAAKTAEPNDDAPEVRRDLGSIRLETPDELPIAQYRGQIIELLQSRQVIV
VCGETGSGKSTQLPKFCVEAGLGQRGRIGHTQPRRLAARSIADRLSEELGAQIGKQVGYQ
IRFGDKTSDETIIKLMTDGILLAETQSDRQLRQYEAIIIDEAHERSLNIDFLLGYLRRLI
DRRDDLKLIITSATIDADRFAQHFADADGPAPILNVQGRGYPVEIRYLPWEQVNEDDANQ
DLGQHVIAALEMLSRSGGGDTLVFLPTERDIREVSHQVAGHYRRLGLAQRYDLLPLYARL
PAAQQQQIFHPSGAKRRVIFATNVAESSLTVPGIHFVIDSGTARISRYSQRTKVQRLPIE
PISRASADQRAGRCGRIGPGICIRLYSEDDYDNRDAFTTPEIRRTNLASVVLKTKTLRLG
NLEDFPLLDPPRPDAIRQGIRTLQELNAIDSSQELTDIGWELGRMPVDPRVGRILLAATQ
SSVLPEVLPIVAAMEIQDPRERPPEKRQAADECHAQFADPQSDFLADLRLWKQFGQWRDD
LSRNQLQRTLRKNFLSPSRMREWADVYRQLREMALTLQKRQSNRSSVGKIRWDDHPDRVI
DEDRSVGVHQTLLSGLLSGVAKVGDKNEYTGAGNLKLFLWPGSHVFDAKPKWIMAAELVE
TSRQYARMVARIQPGWIEQVGAHLLKHSYSDPHWSQKSNGAFCYQQSTLFGLPIVVRRRV
PLPPIDRSTARDLLIRNGLVDGELTTNASFVRHNRRLCDAIEVLAAKTRRRDLVVDPFAV
QSFYARVLPDDVCDRGRLEKHDRLMVPPQWASQLKNSEDVSRWLQQEPPADPDHETVQQC
PTPYMRVSDLVQSESELITQQDFPDQLQVGATTLPLTYRFLPGDQRDGVAVRVHQDALPQ
ISDDRLGWLVPGLLQPKLIAMIKSLPKRIRRNLVPAADIAKQVADELMPVYGQTPFMTAV
CQAFSQHAEMPVQPTDFQAEKLDGYLDFLVEVVDDDGKPIASDRSADRLQRQISPRAASP
QAAVESEQESDWSRKSMTVFDIEQLPVEVIRRRGGVHVAQYPAVVDRGDHAATGVYPDRQ
TAMRQHAGGLVRLYALAERKEIRSQVRWLPALEDAKLRLGSLISADQMESQLTDLIARVA
FVESQPEIRSQAEFEARRRDRGERIGRATQQVAPWLATLSEAYFEIRRELESAPTNQQAM
LDDVRDQLRWLAPERFMAIIPWAHLQHYPRYFRAIAYRIDKNRSGAAARDDEGRKIVSDL
WDRWLQTLPPEHQQADLHVDNEFRWMIEELRVSLFAQPLGTATKISPQRCDKWLRKTSA
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
gtgacgttcaaacccgaaagccccaagctgggcgccgcaaagaccgcggaaccgaatgac
gatgcgcccgaggtccgtcgcgatctgggatcgatccgtctggaaacgcccgatgaattg
cccatcgcgcagtatcgcgggcagatcatcgaactattgcagtcacgacaggtcatcgtg
gtctgtggagaaacgggcagcgggaaatcgacccagttgcccaagttttgtgtcgaagcc
gggctcggacaacgaggacgcatcggccatacccaaccacgacggctggcggcacgcagc
atcgccgaccgtctgagcgaagaattgggggcccagattggcaagcaagtgggctatcag
atccggttcggcgacaaaacctccgacgaaaccatcatcaagctgatgaccgatgggatc
ttgttggcggaaacgcaatccgaccgacagttacgtcaatacgaagcgatcatcatcgac
gaggcacacgagcggtcgctgaacatcgattttttgttggggtacctgcgtcggctgatc
gaccgacgcgatgatttgaaactgatcattacctcggcaaccatcgacgcggatcgattc
gcccaacacttcgccgacgccgatggtccggcgccgattctgaacgtccaaggtcgcggc
tatcccgtcgaaattcgctacctgccttgggaacaggtgaatgaggacgacgccaaccaa
gatctggggcaacatgtcatcgcagcgctggaaatgctatctcgctccggtggcggtgac
acgctggtgtttttgccgaccgaacgagacatccgcgaagtgtcgcaccaagtcgccgga
cactatcgtcgtttgggactggcccagcggtatgacctattgccgctgtatgcccgactg
cccgccgcacagcaacaacagatctttcacccctccggtgcaaagcgtcgtgtgatcttc
gcgaccaatgtcgccgagtcgtcgttgactgtgccgggcatccactttgtcatcgattcg
gggaccgctcggatcagccgctacagccagcggaccaaggtccagcgattgccgatcgaa
ccgatcagccgtgccagcgccgatcaacgggccggtcgttgtggccggatcggtccgggg
atctgcattcggctgtacagcgaagacgactatgacaaccgtgatgcgttcacgaccccg
gaaattcgacgaaccaatctggcgtcggtcgttctgaaaaccaaaacgctgcgactgggc
aatctggaagactttccgctgttggacccgccccgtcccgatgcgattcgacagggcatc
cgcacgctgcaagaactcaatgcgatcgattcatcccaagaattgaccgacatcggctgg
gaactgggacgcatgccggtggaccctcgcgtcggacgtatcttgctggccgcgacccaa
tccagcgtgttgccggaggtgttgcccattgtcgcggcgatggaaatccaagatccacgc
gaacggcccccggagaaacggcaagccgccgacgagtgccacgcccagtttgcggatccc
caaagtgatttcttggccgacctgcggctttggaaacagttcggtcaatggcgcgacgat
ctcagtcgcaaccagttgcaacgcacgctgcgaaagaactttctgtcgccgtctcggatg
cgggaatgggccgacgtgtatcgccaattacgcgaaatggcgttgacgttacagaaacgc
cagagcaaccgatcgtcggtcggcaagattcgctgggatgaccatcccgaccgggtgatc
gacgaagaccgatccgtcggtgtgcatcaaactttgctgtccggtttgctgtcgggggtg
gccaaagtcggggacaagaacgaatacaccggcgcgggcaacttgaagttgttcttgtgg
ccgggaagccatgtctttgacgccaaaccgaaatggatcatggccgccgaattggtggaa
acatcacggcaatacgctcgcatggtcgcacggatccagcccggttggatcgaacaagtc
ggcgcacacttgttgaaacattcctacagcgatccgcattggagccagaaatcaaacggg
gcgttctgttatcagcagtcgacgctgttcggattgccgattgtcgttcgccgccgagtt
ccgctgccaccgatcgaccgatccaccgctcgagatttgttgatccgcaacggcttggtc
gatggtgaactgaccaccaatgcatcctttgtccgtcacaaccgacgtttgtgtgatgcg
atcgaggtgttggctgccaaaacccgacgccgtgatttggtcgtcgatccgttcgcggtg
caatccttttatgccagggttttgccggacgacgtctgcgaccgcgggcgtttggagaag
catgaccgtttgatggtgccgccgcagtgggcgtcgcagctgaagaattccgaagacgtt
tcgcgttggctgcagcaggaaccacccgctgatccggatcacgaaacggtgcagcagtgt
ccgacgccgtacatgcgggtcagcgacctggtccaaagcgaaagcgaattgatcactcag
caagactttcccgatcaattgcaagtgggtgccaccacgttgccgttgacctatcgattc
ttgcccggtgatcagcgggacggcgtcgcggtgcgggttcatcaagacgccctgccccag
atcagcgacgaccgtttgggatggctcgtccccggcttgttgcaacccaagttgatcgcg
atgatcaaatctcttcccaaacgcattcgacgaaacttggtgcccgccgccgatatcgcc
aaacaggtcgccgacgaattgatgccggtgtatggccaaacgccattcatgacggcggtt
tgccaagcgttttcacagcacgccgaaatgccggtccagcccactgatttccaggccgaa
aagctggacggctatctggattttttggtcgaagtcgtcgatgacgatggcaaaccgatc
gcctccgaccgcagcgccgatcggctgcaacgtcaaatttcgcctcgcgccgcgtcgcca
caagcggccgtggaatccgaacaggaatcggattggtcgcggaaatcgatgaccgtcttt
gacattgaacagttgcccgtcgaagtcattcggcggcgcggtggcgtgcatgtggcgcag
tatccggccgtcgtggatcgtggtgatcatgccgccaccggcgtttaccccgatcggcaa
accgcgatgcggcaacacgccggtgggttggtgcgtctgtatgccttggccgaaagaaag
gaaatccgcagccaggtgcggtggttgcccgcactggaagacgccaagctgcgattgggt
tcgctgatttccgccgaccagatggaatcgcaattaacagacctgatcgcccgagtcgct
tttgttgaaagccagcccgaaatccgcagccaagccgaatttgaagccagacgtcgtgat
cgtggcgaacgcatcggtcgcgccacccaacaagtcgcgccctggcttgccacgctgtcg
gaagcctatttcgaaatccggcgtgaattggaatcagcaccaaccaaccagcaagcgatg
ctggacgacgttcgcgatcagttacgctggcttgcaccggagcgattcatggccatcatt
ccttgggcacatctgcagcactatccacgatattttcgtgcgatcgcttatcgaatcgac
aagaaccgaagtggtgcggccgcccgcgacgacgaagggcgaaagatcgtcagtgacttg
tgggatcgatggttgcaaaccctgccgccggaacaccagcaggccgacttgcacgtcgac
aatgaatttcgctggatgatcgaagaactgcgggtcagtctgttcgcacaaccgcttggc
accgcgaccaaaatttcgccgcagcggtgtgacaagtggcttcgcaagacatccgcctag
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integrated database retrieval system
