Crateriforma conspicua: Mal65_13040
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Entry
Mal65_13040 CDS
T09863
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ccop
Crateriforma conspicua
Pathway
ccop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mal65_13040 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccop03019
]
Mal65_13040 (rne)
03009 Ribosome biogenesis [BR:
ccop03009
]
Mal65_13040 (rne)
Enzymes [BR:
ccop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mal65_13040 (rne)
Messenger RNA biogenesis [BR:
ccop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mal65_13040 (rne)
Ribosome biogenesis [BR:
ccop03009
]
Prokaryotic type
rRNA processing factors
Mal65_13040 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Ovate
Motif
Other DBs
NCBI-ProteinID:
QDV62171
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Position
complement(1687419..1689023)
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AA seq
534 aa
AA seq
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MTTKMLINVLQPEESRIAILKDNRLEELYMERKSVEAFAGNIYRGKIVNLEPSIQAAFVD
FGVGRNGFLHISDVEPQYFRQGGYDPEEIMRESDEMAEASARRARESGRGGKRVFKGGRP
RVKPPIQEIFKRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRVGVSRKIED
EDDRKRLKRCLLSLNPPKGLGFIVRTAGAGRKEQELQRDLEYLLRLWKAIVRRVKNKKDP
GEIYAESDLIIRTIRDIFSDEIDEIVIDEKESYDQARDFLKMVMPRVADRLSLYEGREPL
FHKYKLEEEIVQINQRQVPLPDGGSIVIDPTEALVAIDVNSGNFRGNDSAEENAFRLNLS
AAKEIARQLRLRDLGGVIVNDFIDMRKESHRRKVERALRDAMSEDKARTKILRTSPFGLI
EMTRQRIRPGLKRTIYQDCPCCQGRGLVKTAESMSIEVIRMLALAVKNEHIDRVTVRVND
EVAAYLNNKKRREVTEMEDSGKMTVQILGSEGLFPEHLELDCRDEHGNRVEIDA
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccaaaatgttgatcaacgttttgcagcccgaagaaagccgcattgccattttg
aaggacaatcggctggaagagctgtacatggaacgcaagagcgtcgaagcatttgcgggc
aacatctatcggggcaaaatcgtcaacctggaacccagtatccaagcggccttcgtcgac
tttggcgtcggccgcaacggctttctgcacatcagcgatgtcgaaccgcagtactttcgc
caaggcggttacgaccccgaagaaatcatgcgggaatcggatgaaatggccgaagcgtct
gcacgccgcgcacgtgaatcgggccgtggcggcaaacgagtcttcaaaggtggtcgcccg
cgagtgaagccgccgatccaagagatcttcaaacgtggcgacgaagtcctggtccaagtg
atcaaagaaggcatcggaaccaaaggccccacgctcagcacctatatcagcatccccggc
cgctatctggtgttgatgcccgcgctcggccgcgtcggtgtcagtcgcaaaatcgaagac
gaagacgatcgcaaacgattgaagcgatgcctgttgtcactgaacccacccaaaggcctg
ggcttcatcgttcggaccgccggcgcgggacgcaaagaacaggagctgcaacgtgatttg
gaatacctgttgcggctgtggaaggcgatcgtccgccgcgtgaaaaacaagaaggatccc
ggcgaaatttacgccgaaagtgatctgatcattcgcaccatccgcgatatcttcagcgac
gagatcgacgaaatcgtcatcgatgaaaaggaaagttacgaccaagcgcgtgactttcta
aagatggtgatgccgcgggtggccgatcggctgagcctgtacgaagggcgggaaccgttg
ttccacaagtacaagctggaagaggaaatcgtccaaatcaaccagcggcaggttccgttg
cccgacggcggcagcatcgtgatcgatcccaccgaagcgttggtggcgatcgacgtgaac
agcggcaattttcgcggcaacgattcggccgaagaaaacgcattccgcttgaatttgtcg
gcggccaaggaaatcgctcgccaattgcgtttgcgtgaccttggtggtgtgatcgtcaac
gacttcatcgacatgcgaaaggaaagccatcgtcgcaaagtcgaacgggcgctgcgtgac
gcgatgtccgaagacaaggcgcggaccaagatcttgcgtaccagcccattcggtttgatc
gaaatgacacgccaacggattcgtccgggcttgaagcgaacgatctatcaagattgcccg
tgctgtcagggacgcggtttggtcaaaaccgccgaaagcatgtcgatcgaagtcatccgc
atgttggctttggccgtcaagaacgaacacatcgatcgcgttactgtccgagtcaacgac
gaagtcgccgcgtacttgaacaacaagaaacgtcgcgaagtgaccgagatggaagattcc
ggcaagatgaccgtgcaaatcttgggcagcgaaggtctgttccccgaacacttggaactg
gactgccgcgacgaacacggcaaccgcgtcgaaatcgacgcatag
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