Crateriforma conspicua: Mal65_22930
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Entry
Mal65_22930 CDS
T09863
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccop
Crateriforma conspicua
Pathway
ccop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mal65_22930 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccop03019
]
Mal65_22930 (rhlE)
Enzymes [BR:
ccop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mal65_22930 (rhlE)
Messenger RNA biogenesis [BR:
ccop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mal65_22930 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QDV63151
LinkDB
All DBs
Position
2880527..2881816
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AA seq
429 aa
AA seq
DB search
MNKFDSIQLAPPIQKALKSLGYETPTPVQAQAIPPAVAGQDVLGCAQTGTGKTAAFALPI
LDYLENDRPEIIPNQPTTLVLAPTRELAIQIGDSFRDYAKHLRIRLAVIHGGVNQVPQVK
QVRRGVDVLVATPGRLLDLMNQGHIDLSGVEIFVLDEADRMLDMGFLPALKKIIADLPKN
RQSLFFSATMPPKIQSLAGELLFNPVSIDVTPKTKSVDLIRQSIRYVRREEKLDCLHRRL
TEPNMDRAIVFTRTKHGANALVRKLDRQGVVAAAIHGNKSQSARQRALDAFRDKKISVLV
ATDVAARGIDIAGVSHVINFDMPVEAESYVHRIGRTGRAGCDGIAISFCTADEIDELRSI
EKLIGRKIDIENPDAKFRHDGASADAGKPARSSRSGNRSGGQARQNRRRDRSGSTSGRKR
QSRSAAMAR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaattcgattcgatccaactcgcgcccccgatccaaaaagcactgaaatcgctg
ggctacgagacgcccactccggtgcaagcccaagcgattcctcctgcggtcgccggccaa
gacgtcttgggatgcgcacaaaccggaaccggaaagacggccgctttcgcgttgccaatc
ctggactatctggaaaacgaccggcccgaaatcattccgaaccagccgacgacgctggtg
ctggcaccgacacgcgaattggcgatccagatcggcgacagctttcgtgactacgccaag
cacctgagaatccggcttgccgtaatccatgggggcgtcaatcaggttccccaagtcaaa
caagtgcgacgcggggtggatgttttggtcgccacgccaggccgcttgctggacttgatg
aaccagggccacatcgacctcagcggtgtggagatctttgtgttggatgaagccgaccgg
atgttggacatgggattcttgccggccttgaaaaagatcattgccgacctgcccaagaac
cgccagtcgctgtttttctccgcgaccatgccgcccaaaattcaatcgcttgccggcgaa
ttgctgttcaatccggtgtccatcgacgtcacgccaaagaccaaaagcgtcgacctgatc
cgccagtcgattcgttacgtccggcgtgaagaaaaactggattgccttcaccgccggctg
accgaaccgaacatggatcgggccatcgtgttcacccgaaccaagcatggtgccaacgct
ttggtgcgaaagctcgatcgccaaggtgtcgttgccgctgcgattcacggcaacaaatca
caatcggcccgacagcgtgcgttggacgcgtttcgtgacaagaagatttccgtgttggtg
gcaaccgatgtcgccgcgcgtgggatcgacatcgcgggcgtgtcacacgtcatcaacttt
gacatgccggtcgaagccgaaagctacgtccaccggatcggccgaacaggacgcgccgga
tgtgatggcatcgcgatttccttttgcacagcggatgaaattgatgaactgcggtcgatc
gaaaaactgatcggccgaaaaatcgacatcgagaatccggatgcgaagttccgccatgac
ggcgcatcggcggacgctggtaaaccggcgaggtccagccgatccggaaatcggtccggc
ggccaagcccgacagaaccgtcgtcgcgatcgcagtggcagcaccagcggacgtaaacgc
caatcacgttcggccgccatggcccgctaa
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