Crateriforma conspicua: Mal65_44530
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Entry
Mal65_44530 CDS
T09863
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccop
Crateriforma conspicua
Brite
KEGG Orthology (KO) [BR:
ccop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccop03016
]
Mal65_44530 (rtcB)
Enzymes [BR:
ccop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mal65_44530 (rtcB)
Transfer RNA biogenesis [BR:
ccop03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mal65_44530 (rtcB)
Prokaryotic type
tRNA splicing ligases
Mal65_44530 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDV65283
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All DBs
Position
5815576..5817060
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AA seq
494 aa
AA seq
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MTTTMIPTGEATAILPAGDHHSPVKVFGTEAIRNTFDDLCLQQAINSRCAPGVTELVLNP
DAHCGYGAPIGCVLASPTHVYPGPVGFDIKCSMSLLQTDLPADAVQDKSTRRALIDAVCR
RIPTGMGKGSRDVPKARRIDEKIGSAAMTEGASPDVLSRLGIPIDWPDRCEDAYHRGHDG
TIDALKSRLYELRQQRGFKKFRDKVQQLGSYGGGNHFGECEVVQIADDEDAKATAKVFGL
IDGHVAFLSHCGSRGIGHRLASHQFQVLEQKFDQWGIPYPGSDKQLVYAPLGSVEADRYL
DDMALGANFATVNHLLINALVLEAFQEIIPGTRGHLVYFISHNIARQETVNQQACWVHRK
GATRAFPGGHPALARTPFAQTGHPILLPGNPQAGSSVMVAATGAKDSCYSVNHGAGRVLG
RRRAIRELNQESIDQSFNDADILTNCRRYPRDEAPAVYKDFNEVLRSVSKAGLATEVARL
RAKFVIKDAADADD
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccaccatgattcccaccggcgaggcaaccgcaatcttgccggccggcgaccat
cattcaccggtcaaggtgttcggtaccgaagcgatccgcaacacgttcgacgacctatgc
ctacagcaggcgatcaactcccgctgcgccccgggcgtaaccgaactggtgcttaatcca
gacgcacactgtgggtacggtgcacccatcggatgcgtgctggcgtcgcccacccacgtc
tatcccgggcccgtcggtttcgacatcaagtgttcgatgagcctgttgcaaactgacctg
cccgcggatgcagttcaagacaaatcaactcgccgggcattgatcgatgccgtgtgtcgc
cgcattcccaccggcatgggcaaaggttcgcgtgacgttcccaaagcccgacgaatcgac
gaaaagatcggcagtgcggcaatgaccgagggcgcatcgcccgacgtgttgtcgcgactg
gggattccgatcgactggcccgaccgatgcgaagacgcttaccaccgcggacacgatgga
acaatcgatgcgttaaagtcgcgtttgtacgaacttcgacaacaacgcggattcaaaaag
ttccgcgacaaagtccagcaacttggttcctatggcggcggaaaccatttcggtgaatgc
gaggtcgtccagattgcggacgatgaagatgccaaagcgaccgccaaggtctttgggttg
atcgatggccacgtggcgttcctatcgcactgcgggtcccgcgggatcggacatcgcttg
gcttcgcatcagttccaggtcttggaacaaaaatttgaccagtggggcattccgtatccg
ggcagcgataaacaactggtttacgccccgctgggcagcgtcgaagccgatcgttacctg
gatgacatggcactgggtgccaatttcgcaaccgtcaatcacttgttgatcaacgcgttg
gtcttggaagcgtttcaagagatcattcccggcacgcgtggtcacttggtgtacttcatc
agtcacaacatcgcgcggcaagaaacggtcaaccaacaggcatgttgggtccaccgaaaa
ggtgccacccgggcgtttcccggcggccaccccgcgttggcgcggacacctttcgcccaa
acaggtcaccccattcttttgccaggcaatccgcaggccggatccagcgtgatggtcgcc
gcaaccggtgcgaaagacagctgctacagcgtcaatcacggcgcaggccgcgtgctggga
cgacgacgcgcgattcgcgagctgaaccaagaatcgattgaccagtcattcaatgacgcc
gacatcttgaccaattgccgtcgttatccgcgtgatgaggcgccagcggtctacaaagat
ttcaacgaagtgttgcgtagcgtttccaaagcgggcttggccacggaggtggctcgcttg
cgtgccaagtttgtcatcaaagacgccgcagacgccgatgattga
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