Caulifigura coniformis: Pan44_21010
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Entry
Pan44_21010 CDS
T09806
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccos
Caulifigura coniformis
Brite
KEGG Orthology (KO) [BR:
ccos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccos03016
]
Pan44_21010 (rtcB_1)
Enzymes [BR:
ccos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pan44_21010 (rtcB_1)
Transfer RNA biogenesis [BR:
ccos03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pan44_21010 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
Pan44_21010 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDT54074
UniProt:
A0A517SD65
LinkDB
All DBs
Position
complement(2588213..2589604)
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AA seq
463 aa
AA seq
DB search
MNKKDLMQLGVPEECVPLAIEAISQSVERGALKPKDALKRIPDVVDQPANYLGDPVFGAL
ATEIASVGKYEPREPITYRTWGADGIDEQSHAQMRNACSLPNAVGAALMPDAHVGYGLPI
GGVLALENAVCPYAVGVDIACRMKMSVLDLPAESLDNEQMFHVFRKSLEDGTRFGTGVGW
ERKQMHPVLDQDWSITRVTRESKDKAWKQLGTSGSGNHFVEYGLLTLDEEELGLKPGQYV
ALLSHSGSRGPGHAVCSQYSSLAMSKLPPRHAELKHLAWLDLDSQAGAEYWAAMNLMGDY
AAANHDVIHRNVSRLIGAEIIAGVENHHNFAWKECHGGKEVVVHRKGATPAGPGVLGVIP
GSMATPAFVVRGKGNPESLWSASHGAGRVMSRKKARDSYRFRAVQNDLATKGVRVLSAGA
DEVPFVYKDIHSVMAAQSDLVAPIARFDPRIVKMCDDGSAPED
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagaaggacctgatgcagctcggcgtgcccgaggagtgcgtcccgctcgcgatc
gaagcgatctcgcagtcggtcgagcgcggagccttgaagccgaaagacgccctcaagcgc
atccctgatgtcgtagaccagccggcgaactatctgggcgatcccgtcttcggcgccctg
gcgaccgaaattgcctccgtcggcaagtacgaacctcgtgagcccatcacttatcgcacc
tggggcgcagatggcatcgacgagcagtcccacgcccagatgcgcaacgcctgttcgctt
cccaatgccgtcggagcggccctcatgcctgatgcgcatgtcggttacggactgccgatc
ggcggtgtgcttgcgctcgaaaacgccgtctgcccctacgccgtcggcgtcgacattgcc
tgccgcatgaagatgtccgttctcgacctcccggccgagtcgctcgacaacgaacagatg
ttccacgtcttcaggaagtctctcgaggatggaacgaggttcggaaccggcgtcggctgg
gaacgcaagcagatgcacccggtcctcgaccaggactggagcatcacgcgcgtgacccgc
gagtccaaggacaaggcgtggaagcaactcggcacctccgggtcgggcaaccacttcgtc
gagtacggcctgctcaccctcgacgaagaggagctcggcctgaagcccgggcagtacgtt
gcgctcctcagccacagcggaagccgcggacccggtcatgccgtctgttcgcagtacagc
agcctggcgatgtcgaaactcccgccgcgacacgccgaactcaagcatctcgcctggctc
gatctcgattcccaggccggagcggaatactgggccgccatgaacctcatgggtgactac
gcggccgccaatcacgacgtgatccaccgcaatgtgagccggctcatcggagcagagatc
attgcgggcgtcgaaaaccaccacaatttcgcgtggaaggaatgccacggaggaaaggaa
gtcgttgtgcaccgcaagggagcgacgccagccggtcccggagtcctcggggtcatccca
gggtcgatggcaactccggcgttcgtcgtgcgcggaaaaggaaacccggaatcgctctgg
tccgcgtcacacggcgcaggccgcgtcatgtcgcgaaagaaggcccgcgattcctaccgg
ttccgcgcggtgcagaacgacctcgcgacgaaaggagtccgcgttctctccgccggcgcg
gatgaggttcccttcgtttacaaggacatccactccgttatggcagcccagtccgatctc
gtcgccccgatcgcgcgcttcgatccgcggatcgtcaagatgtgcgacgacggcagtgca
ccggaagactga
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