Caulifigura coniformis: Pan44_29400
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Entry
Pan44_29400 CDS
T09806
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccos
Caulifigura coniformis
Pathway
ccos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan44_29400 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccos03019
]
Pan44_29400 (rhlE)
Enzymes [BR:
ccos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pan44_29400 (rhlE)
Messenger RNA biogenesis [BR:
ccos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pan44_29400 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDT54901
UniProt:
A0A517SFJ5
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All DBs
Position
3554890..3556989
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AA seq
699 aa
AA seq
DB search
MLFQDLGLAEPVLKAVTAEGYTTPTPIQEGAIPHIMEGRDLIGTAQTGTGKTAAFALPIL
HRLITIPDNQNGYYRPRVLVLSPTRELATQIADSFETYGAGSGMRHVTVYGGVSQVPQVK
MLRRGVDIIIATPGRLLDLHNQGCLQLESIEMFVLDEADRMLDMGFMPDIRRIIDQLPAE
RQTLLFSATMPPAIERLASELLKNPAEVRIAPKAATTDLVTQSVFHVERGNKPAALASYL
TSQPVERAVVFTRTKQSAERVATRLCRAGLSADAIHGNKTQNARQRTLNAFRANRVTVLV
ATDVAARGLDVDGVSHVVNYDLPMEPETYVHRIGRTGRAGAFGVAMSFVDREQRSLLGAI
ERLLRKKIPVQAIDINDNASALALPGSPPSPVESTPAPKPRQAPPPHHDRPKGEYRENGP
RREYREQGQGNRYEGRRDGESRGNGEGRSYGDRQNRSYGNRPQGQQGGRPAYGSRPKPGD
RPKYGERPKYGERPKYGERREEGRSQDRPQYGARPPRQQYGDRPKFVPRERSEQAAGDQP
QGGDAPAPRQSERRFERRPAGDRPQGRYQGGRPAYGDRPRRDGEGRPVYGDRPRRDGEGR
QVYGERRPGGKFPPKRFEGQRQAQGKDQRPRRHDDAAAVLPPAGPRKEMREGSQSAGADG
QQARRKAPFMKKKRHQGGPGGSHSTGPATPRRYDNGSAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttcaagaccttggccttgccgaaccagtgctgaaagcagtgactgcggagggc
tacaccaccccgacgccgatccaggaaggcgcgattccgcacatcatggaggggcgcgac
ctgatcgggaccgcacagacgggaaccggcaagaccgctgcgttcgcgctgccgatcctg
catcggctcatcacgattccggacaaccagaacggctactacaggccccgcgtccttgtc
ctctcgccgacccgcgaactcgctacgcagattgcggacagcttcgagacctacggcgcc
ggcagcgggatgcgtcacgtcaccgtgtacggcggcgtcagccaggtgccgcaggtgaag
atgctgcgccgcggcgtcgacatcatcatcgcgacccccggccgcctgctcgatctccac
aaccagggctgcctgcagctcgagtcgatcgagatgttcgtgctcgatgaagccgaccgc
atgctcgacatgggattcatgcccgacatccggcggattatcgatcagcttcccgccgag
cgtcagacactcctgttctcggcgacgatgccccctgccattgagcggctggcctctgaa
ctgctgaagaacccggccgaagtgcggatcgcccccaaggcggccacgaccgacctcgtc
acgcagagcgtcttccacgtcgagcgcggcaacaagccggctgcgctggcctcgtacctc
acgagccagccggtcgagcgagccgtggtcttcacccggacgaagcagtcggccgaacgc
gtcgccacgcggctctgccgcgccgggctctcggccgacgcgatccatggaaacaagacg
cagaacgcgcggcagcgcacgctgaacgcgttccgcgcgaaccgcgtgacggtgctcgtc
gcgactgacgtcgcggcccgcggactcgatgtcgacggcgtgtcgcacgtcgtcaattac
gacctcccgatggagcctgagacctacgtccaccgcattggccgcaccggccgggcaggg
gcgttcggagtcgcgatgtcgttcgtcgaccgcgagcagcgcagcctgcttggcgccatc
gaacgactgttgcgcaagaagattccggtccaggcgatcgacatcaacgacaatgcgtcg
gcgctggcccttccgggcagcccgccgtcacccgtcgagtcgacgcccgccccgaagccg
cgccaggcacctcctccgcaccacgatcggccgaaaggcgaataccgcgagaatggcccg
cgccgcgaataccgtgaacagggccaggggaaccggtatgaaggccgtcgtgatggcgaa
agccggggcaacggtgaaggccgttcctacggtgaccgccagaaccgttcctacggcaat
cgcccgcagggccaacagggtggtcggccggcctacggcagccgccccaagccgggtgac
cggccgaagtatggcgagcgccccaaatacggtgagcgtccgaagtatggcgaacggcga
gaggaaggccgctcgcaggatcggccgcagtacggcgcccgtccgccgcgtcagcagtac
ggcgaccgtccgaagtttgtgccccgggaacgctcagaacaggccgctggcgatcagccg
cagggcggagatgctccggccccgcggcagtcggagcggcggttcgagcggcgtcctgcc
ggtgaccgcccgcaaggccgttaccagggaggccgcccggcctacggcgatcggccacgc
cgcgacggcgaaggtcgtcccgtctacggtgaccgtccccgccgtgacggcgaaggtcgc
caggtctatggagagcgccgtcctggcggaaagttcccgcccaaacggtttgaaggtcag
cggcaggcccagggcaaggatcagcgtccccgccggcacgacgacgcggcggctgttctg
cctcccgccggtccccgcaaggaaatgcgggaaggttcgcagtcggccggagccgatggc
cagcaggccaggcggaaagcgcccttcatgaagaagaagcgtcatcaggggggccccggc
ggttcacactcgacgggaccggccactccccgccgctacgacaacggctcggccgagtga
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