KEGG   Caulifigura coniformis: Pan44_33250
Entry
Pan44_33250       CDS       T09806                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
ccos  Caulifigura coniformis
Pathway
ccos03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccos00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Pan44_33250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccos03021]
    Pan44_33250
   03019 Messenger RNA biogenesis [BR:ccos03019]
    Pan44_33250
Transcription machinery [BR:ccos03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Pan44_33250
Messenger RNA biogenesis [BR:ccos03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Pan44_33250
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N S1CSD-TOTE-2 Spore_III_AA NACHT Mor OB_RNB AAA_25
Other DBs
NCBI-ProteinID: QDT55282
UniProt: A0A517SGN3
LinkDB
Position
complement(4014609..4016081)
AA seq 490 aa
MARPIKPASPRPLRSDGGFDPSDPPIKRTSTGAASAGAVDGRPANADEDEEEYPEFLAQA
DLKYEEVKKGDIHIAALQRLTMKELLDLAQRENISEYAGLKKQDLIFRILKERTKMHGLM
FGEGTLEILPDGFGFLRSPDYHYLPCPDDIYVSPSQIRRFGLKNGATVAGAIRPPKENER
YFALLRVEAINGHDPNVQSTRVPFDDLTPLHPQKRLKLATTPDELSTRVMDLVTPIGMGQ
RGLIVSPPRAGKTVLLQRLAKAVLENHPDAYVIVLLIDERPEEVTDMERQVKGPNCEVIS
STFDEPPSRHIQVAEMVIEKAKRMVEFGVDVVIFLDSITRLARAWNTEVPHSGKILSGGV
DANALQHPKRFFGAARCVEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNTELHLDRRM
VEKRIWPAIDVNRSGTRREELLMSEEELKRVWILRRVLNDMNPVEAMELLVNRMKRTKTN
DEFLLSMNLT
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggcacgtcccatcaagcccgcgtcgccgcgccctctccggagcgatggtggattcgat
ccatccgatccgcccatcaaacgcacgtccacaggcgcagcgtcagccggcgccgtcgac
ggacgtcctgcgaatgctgacgaggacgaagaggaataccccgagttcctcgcccaggcc
gatctgaaatacgaagaagtcaaaaagggcgacatccacatcgcggcccttcagcggctg
acgatgaaggagcttctcgacctcgcccagcgtgagaacatctccgaatacgccgggctg
aagaaacaggacctcatcttccgcatcctgaaagagcggacgaagatgcacggtctgatg
ttcggcgagggcacgctcgaaatcctcccggacggcttcggcttcctcagaagccccgat
taccactacctcccctgccccgacgacatctacgtctcccccagccagatccggcgcttc
ggcctgaagaacggagccaccgttgccggcgcgatccggcctcccaaggagaacgaacgc
tatttcgcgctcctccgcgtcgaagcgatcaacggccacgacccgaacgtccagtcgacg
cgcgtcccgttcgacgacctcaccccgctccatccgcagaagcggctgaagctcgcgacg
acgccggatgaactcagcacgcgcgtcatggacctcgtcacgcccattggcatgggccag
cgcggactgatcgtctctcccccccgcgccggcaaaacggtcctcctgcagcggctggcg
aaagccgtgctggaaaatcatcccgacgcctacgtcatcgtgctgctgatcgatgagcgg
cccgaagaagtgaccgacatggagcgtcaggtcaaagggcccaactgcgaagtcatctcc
agcacgttcgatgaaccgcccagccggcacatccaggtggccgaaatggtcatcgagaag
gccaagcggatggtggagttcggcgtcgatgtcgtgattttcctcgactcgatcacccgt
ctcgcccgcgcctggaacaccgaagtcccccactccggaaaaatcctctccggcggcgtc
gacgccaatgccctgcagcatcccaagcgcttcttcggcgccgcgcgctgcgtcgaagag
ggaggcagcctcacgatcatcgcgacggccctcatcgacaccggctcgaagatggacgag
gtgattttcgaagagttcaaagggaccggaaacaccgagcttcacctcgaccgccgcatg
gtcgaaaaacgcatctggcccgccatcgacgtcaatcgctccggcacgcgccgcgaagag
ctgctcatgagcgaggaagagctcaagcgggtctggatcctccgccgcgtgctcaacgac
atgaaccccgtcgaagccatggaactgctcgtcaaccgcatgaagcgcaccaagacgaac
gacgagttcctcctcagcatgaacctcacctga

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