Caulifigura coniformis: Pan44_33250
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Entry
Pan44_33250 CDS
T09806
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
ccos
Caulifigura coniformis
Pathway
ccos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan44_33250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccos03021
]
Pan44_33250
03019 Messenger RNA biogenesis [BR:
ccos03019
]
Pan44_33250
Transcription machinery [BR:
ccos03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pan44_33250
Messenger RNA biogenesis [BR:
ccos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pan44_33250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
Spore_III_AA
NACHT
Mor
OB_RNB
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QDT55282
UniProt:
A0A517SGN3
LinkDB
All DBs
Position
complement(4014609..4016081)
Genome browser
AA seq
490 aa
AA seq
DB search
MARPIKPASPRPLRSDGGFDPSDPPIKRTSTGAASAGAVDGRPANADEDEEEYPEFLAQA
DLKYEEVKKGDIHIAALQRLTMKELLDLAQRENISEYAGLKKQDLIFRILKERTKMHGLM
FGEGTLEILPDGFGFLRSPDYHYLPCPDDIYVSPSQIRRFGLKNGATVAGAIRPPKENER
YFALLRVEAINGHDPNVQSTRVPFDDLTPLHPQKRLKLATTPDELSTRVMDLVTPIGMGQ
RGLIVSPPRAGKTVLLQRLAKAVLENHPDAYVIVLLIDERPEEVTDMERQVKGPNCEVIS
STFDEPPSRHIQVAEMVIEKAKRMVEFGVDVVIFLDSITRLARAWNTEVPHSGKILSGGV
DANALQHPKRFFGAARCVEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNTELHLDRRM
VEKRIWPAIDVNRSGTRREELLMSEEELKRVWILRRVLNDMNPVEAMELLVNRMKRTKTN
DEFLLSMNLT
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtcccatcaagcccgcgtcgccgcgccctctccggagcgatggtggattcgat
ccatccgatccgcccatcaaacgcacgtccacaggcgcagcgtcagccggcgccgtcgac
ggacgtcctgcgaatgctgacgaggacgaagaggaataccccgagttcctcgcccaggcc
gatctgaaatacgaagaagtcaaaaagggcgacatccacatcgcggcccttcagcggctg
acgatgaaggagcttctcgacctcgcccagcgtgagaacatctccgaatacgccgggctg
aagaaacaggacctcatcttccgcatcctgaaagagcggacgaagatgcacggtctgatg
ttcggcgagggcacgctcgaaatcctcccggacggcttcggcttcctcagaagccccgat
taccactacctcccctgccccgacgacatctacgtctcccccagccagatccggcgcttc
ggcctgaagaacggagccaccgttgccggcgcgatccggcctcccaaggagaacgaacgc
tatttcgcgctcctccgcgtcgaagcgatcaacggccacgacccgaacgtccagtcgacg
cgcgtcccgttcgacgacctcaccccgctccatccgcagaagcggctgaagctcgcgacg
acgccggatgaactcagcacgcgcgtcatggacctcgtcacgcccattggcatgggccag
cgcggactgatcgtctctcccccccgcgccggcaaaacggtcctcctgcagcggctggcg
aaagccgtgctggaaaatcatcccgacgcctacgtcatcgtgctgctgatcgatgagcgg
cccgaagaagtgaccgacatggagcgtcaggtcaaagggcccaactgcgaagtcatctcc
agcacgttcgatgaaccgcccagccggcacatccaggtggccgaaatggtcatcgagaag
gccaagcggatggtggagttcggcgtcgatgtcgtgattttcctcgactcgatcacccgt
ctcgcccgcgcctggaacaccgaagtcccccactccggaaaaatcctctccggcggcgtc
gacgccaatgccctgcagcatcccaagcgcttcttcggcgccgcgcgctgcgtcgaagag
ggaggcagcctcacgatcatcgcgacggccctcatcgacaccggctcgaagatggacgag
gtgattttcgaagagttcaaagggaccggaaacaccgagcttcacctcgaccgccgcatg
gtcgaaaaacgcatctggcccgccatcgacgtcaatcgctccggcacgcgccgcgaagag
ctgctcatgagcgaggaagagctcaagcgggtctggatcctccgccgcgtgctcaacgac
atgaaccccgtcgaagccatggaactgctcgtcaaccgcatgaagcgcaccaagacgaac
gacgagttcctcctcagcatgaacctcacctga
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