Caulifigura coniformis: Pan44_52460
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Entry
Pan44_52460 CDS
T09806
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
ccos
Caulifigura coniformis
Brite
KEGG Orthology (KO) [BR:
ccos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccos03021
]
Pan44_52460 (rpoD)
Transcription machinery [BR:
ccos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pan44_52460 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
HTH_23
KORA
Motif
Other DBs
NCBI-ProteinID:
QDT57179
UniProt:
A0A517SM23
LinkDB
All DBs
Position
complement(6358317..6359204)
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AA seq
295 aa
AA seq
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MAAKGGKTLTTAASRRLRLRAERILDQEITFIFSRTFASLSDDDVELRPREEMYRYDSGS
PLAAQDDAIGDLLTAVGEQSLFRRMNFLRYKASRLRSRLSRTNPKKKAVDEIERLQQEAE
TCRSMIAQANLRLVAKIARKLSRNEDFEDFQSEGNFILLYSIDRFDIDRGFRFSTYATHA
IQRHLYRQMHRKARRTSRESITAGEILAESVEAAPVAEEPDFDPALSKRVVELMNTLDPR
EAAILKARFGFGGDKGEPLRAVATRLGLSKERVRQLQKRAIERLQGMMEPRMADE
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
gtggcggccaagggtgggaagaccttaaccacggcggcttcgcgacggctgcgactccgc
gccgaacggattctcgatcaggaaatcacgttcatcttcagccgaacatttgccagcctt
tcggacgacgacgtcgagttgcgcccgagagaggagatgtatcgctacgactcgggaagc
ccgctggcggcacaggatgacgccatcggggatctgctgaccgcggtcggcgaacaatcg
ctgttccggcggatgaatttccttcgctacaaggcgagccggctccggagccgactgtcg
cggacgaatcccaagaagaaggccgtcgacgagattgaacggctgcagcaggaagcggaa
acgtgccgctccatgatcgcgcaggcgaacctgcggctggtcgccaagattgcccgcaag
ctctcgcggaacgaggatttcgaggactttcagagtgaaggcaacttcattctgctgtat
tcgatcgatcgctttgatatcgatcgggggtttcggttcagcacctatgcgacgcacgcc
attcagcggcatctgtatcgccagatgcatcgcaaggcccgtcggacatcgcgggaatcg
atcacggctggcgaaatcctggcagaatcggtcgaggcggctccggtcgcagaggagccc
gatttcgacccggccctgtcgaagcgcgtcgtggaactgatgaacacgctcgacccgcgt
gaggccgcgatcctgaaggcccgcttcggatttggcggggacaaaggggagccgttgcgg
gccgtcgccacacgactcggcctgagcaaggaacgggtgaggcaactgcagaagcgagcg
attgaacgactgcagggaatgatggagccgcggatggccgacgaatga
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