Caulifigura coniformis: Pan44_55710
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Entry
Pan44_55710 CDS
T09806
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ccos
Caulifigura coniformis
Pathway
ccos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan44_55710 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccos03019
]
Pan44_55710 (rnr)
03016 Transfer RNA biogenesis [BR:
ccos03016
]
Pan44_55710 (rnr)
Enzymes [BR:
ccos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pan44_55710 (rnr)
Messenger RNA biogenesis [BR:
ccos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pan44_55710 (rnr)
Transfer RNA biogenesis [BR:
ccos03016
]
Prokaryotic type
tRNA degradation factors
Pan44_55710 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
DUF1918
Motif
Other DBs
NCBI-ProteinID:
QDT57502
UniProt:
A0A517SN05
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All DBs
Position
complement(6738478..6740757)
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AA seq
759 aa
AA seq
DB search
MPLPIEQLLRDYISRPGYKPEKAKPLAKALGIKKQRFEEFKEKVDQLVAAGTLGRTESGK
IIAGKGLLKGAASSGRQIVGTLKRTAAGDGFVLPQGANREHHNVEIFIDSSQMRDAQTGD
TVLVEFMAERMGGGRRMGRIVEVVERASTTFVGVYYEDDGQAWVMIDGKQFADPVWLGDP
GAKGAQPEDKVVIDMVRFPTPHRHGEAVITQVLGARGEPGVDLLTIIHEFGLPTEFPEAV
LAEAREKALTIDEEVFVDREDLTNETIITIDPVDARDFDDAISLHRTDDGHWHLGVHIAD
VSYFVTPGSPLDVEAKRRGNSVYLPRHVIPMLPEVISNSLASLQADHVRYTLSAFIEYSP
EGIPVHTRFARTAIKVKQRFAYEQVMPIINNPKKATDVSDEVLKLLLDMFELAMILRKRR
FAKGALELSMGDIELEIDKEGRVTGAHEEHDDESHQIIEEFMLAANVAVATFLDDRGDEF
VRRVHADPSEMKMKAFGEFAASVGHPVKQVQSRKELQALLEKVRPLPEGRAVNYALLRSL
KQAVYSPEVAGHYALAEDQYAHFTSPIRRYPDLLIHRQLIGRITGTRTYSVPRGAELAQV
AQHCSDTERRAEQAERELKKIKLLEYLYERISEEFDATVTGVDRYGFFCRGNTMPAEGLV
HITTLRDDIYDYDRAGHCLTGRRSGRTIRLGDPVRVAVARVDIDRRELDLRLVEGPGPST
RRSSGPKKSGSKPGRPRPSKGSNSGPPREKGRARKRRGH
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
ttgcctcttccgattgaacaactgctccgggattacatctcccgtcccggctataagccc
gagaaggccaagccgctcgccaaagccctgggcatcaagaaacaacgcttcgaagaattc
aaagaaaaggtcgaccagctggtcgccgccggcacgctcggccggaccgaatcgggcaag
atcatcgccggcaagggactgctgaagggcgctgcatccagcggtcgccagatcgtcgga
accctcaagcggaccgcggccggcgacggcttcgtcctcccccagggcgccaaccgcgag
catcacaacgtcgagatcttcatcgactcgtcgcagatgcgcgatgcccagacgggtgat
accgtgctcgtcgaattcatggccgaacgcatgggcggcggccgccgcatggggcgcatc
gtcgaagtcgtcgaacgcgcctcgaccaccttcgtcggcgtctactacgaagacgacggg
caggcctgggtcatgatcgacggcaagcagttcgccgatcccgtctggctcggcgacccc
ggcgcgaaaggcgcccagccggaagacaaggtcgtcatcgacatggtccgcttccccacg
ccccaccggcatggcgaggcggtgatcactcaggtcctcggagcgcgcggcgagcccggc
gtcgacctgctgaccatcatccacgagttcggtctcccgaccgaattccccgaagcggtt
ctcgctgaggcccgtgaaaaggccctcacgatcgacgaggaagtcttcgtcgaccgggaa
gacctgacgaacgagacgatcatcacgatcgaccccgtcgacgcccgcgatttcgacgat
gccatctcgctccatcggactgatgatggccactggcatctcggcgtgcacatcgccgac
gtgtcgtacttcgtgacgcccgggtcgccgctggatgtcgaagccaagcgccgcggcaac
agcgtttacctgccgcggcacgtgatccccatgctgccggaggtgatctccaattcgctg
gccagcctgcaggccgaccacgtccgctacacgcttagcgcgttcatcgagtattcgccg
gaaggcatcccggttcatacccgcttcgcgcgcacggccatcaaggtgaagcagcggttc
gcctatgagcaggtgatgccgatcatcaacaacccgaagaaggcgacggatgtttcggac
gaagtcctgaagctgctgctcgacatgttcgagctggcgatgatccttcgcaaacgccgc
ttcgcgaaaggggccctcgagctctcgatgggcgacatcgagctggagatcgacaaggaa
ggccgcgtcaccggcgctcatgaagaacacgacgacgaaagccaccagatcatcgaagag
ttcatgctggcggccaacgtggccgtggcgaccttcctcgatgatcggggggacgagttc
gtccgccgcgttcacgccgatccgagcgaaatgaagatgaaggcgttcggcgagtttgcc
gcctcagtcggccatccggtcaagcaggtgcagagccgcaaggaactgcaggccctgctc
gagaaggtccgcccactgccggaaggccgtgcggtcaactacgcactccttcgcagcctc
aagcaggccgtctattcaccggaagtcgccggtcactacgcactcgccgaagatcagtac
gcgcacttcaccagcccgatccgccgctatcccgacctgctgatccaccgccagctcatc
ggacggattaccggcacgcggacctattctgtgccgcggggggcggagttggcccaggtc
gcccagcactgctccgacaccgaacggcgggccgagcaggcggagcgcgagctcaagaag
atcaagctcctggagtatctctacgagcggatcagcgaagagtttgatgcgacggtgaca
ggcgtcgatcgctacgggttcttctgccgcggcaacaccatgccggccgaaggcctcgtg
cacatcaccaccctgcgcgacgacatctacgactacgatcgggccgggcattgcctgacc
ggccggcggtcgggccggacgatccgccttggcgaccctgtccgcgtggccgtcgcccgc
gtcgacatcgatcgccgtgaactcgatttgcggctggtcgaaggccccgggccatcaacc
cgccgctcttccggaccgaagaagtcgggttccaagcccggccgcccgcgcccatcgaag
gggtcaaattccggccccccgcgcgaaaaaggccgagcccgaaaacgccgcggccactga
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