Capsulimonas corticalis: CCAX7_007500
Help
Entry
CCAX7_007500 CDS
T08728
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccot
Capsulimonas corticalis
Pathway
ccot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCAX7_007500 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccot03400
]
CCAX7_007500 (mfd)
Enzymes [BR:
ccot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCAX7_007500 (mfd)
DNA repair and recombination proteins [BR:
ccot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCAX7_007500 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDI28699
UniProt:
A0A402D1T5
LinkDB
All DBs
Position
complement(876112..879717)
Genome browser
AA seq
1201 aa
AA seq
DB search
MDLRELPALVDDLPAYHELKKRIAAGGLTQIEGLPVAAKSFILAQLARELGHPIVVVTYN
ADQAARICADLARYGVEDDALVNLAASTETLVFAEGAPDLAVLGRRTAALQKLARGEARL
VVGPIGAFLQRTVAPEALRDRSVTITVNESVEIADLEKTLAGFGYDRVEAVENPGQWTRR
GGILDIFPGDSLRPFRIDFFGDDVESIRPFDVESQRSVGKVETLAVHAVREAPLTEDAVA
EAVARLQRELPGRMAQLRKTNEEGRGAEHAERLEERIEADIAQLSSRTYFDQTEYYLPYL
EPREMCALDYLPEGALLVLDEPNQAKARLEQIEKEVIEIAQTRAARGEWLTDETPHACGF
SAVVSHAAKSPATVIFSLLGQKVDGLRASDPISTQSGAMESFAGRFPSFFEALDGWLGAR
FRVVLVTEQSQKIRELLADHKIPASPQDRLQPGGEGGVYVLDGSLLGGFKLAEAALMVAT
DTDIFGHRAHQKPKKRAFKEGLKLTSYLELREGDYVVHINHGIGYYAGITRLKSKDGAER
DYLLLEYAGGDKVYVPTDQIDRVQKYIGSQESTPTVTRLNSGEWSRATKKAQKQVQEMAA
DLIKLYAARKAATGHSIAPDTPWQMEMEEAFPYQETPDQLAAIEDVKRDLEDDKPMDRLI
CGDVGYGKTEVAIRAAFKVVNAGRQVAVLCPTTILAQQHLVTFRERLAQYPVKIEMLSRF
VSKAEADRTIKALAEGNVDIVVGTHKLLSKDVKFRNLGMLVVDEEQRFGVAHKERIKAIK
KNVDVLTLTATPIPRTLHMSLSGIRDMSLIDDPPEGRQPIKTYVKEYDDELIREVILREL
DRGGQVYYLHNRIESITHVAEHLRRLVSQATAEIAHGQMHEDDLEDVMLRFANKEFNILV
CTTIVESGLDIPNVNTIIVDNADKLGLAQLYQLRGRVGRSKRQGYAYLLYRKDKILSEIA
EKRLGALREFSDLGSGYKVAMRDLEIRGAGNLLGAAQSGTVATVGFDLYTQLLSQAINEL
KGEDMEADWELPNVALPLDAHIPPRYIPSEAERILIYKKLTAVRRMEDVARIQEELEDRY
GDPPRSVWNLLATLRLRLRCLEVGIGNIVAEKRRVAIRFQGTHIPMDTIKKLARLYMQHQ
FLPDVVFLATPDTPARMLTAVEEMVEVLAKALPKDGQPGVVDSPKQPPRPVGRTGVRSAS
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgcgaactgccggcgctggtggacgatctccctgcttatcacgaactcaag
aaacggatcgcggcgggcggcctgactcagatcgaggggctgccggtcgcggcgaagagc
tttatcctggcgcagctcgcgcgcgagctggggcatccgattgtcgttgtaacctataac
gccgaccaggcggcgcggatctgcgcggatctggctcggtacggggtggaggacgacgcg
cttgtcaacctcgccgcatccaccgaaacgctggtcttcgccgaaggcgcgccggacctt
gcggtcctgggacggcggacggcggccctgcaaaagctggcgcggggcgaggcgcgcctg
gtcgtcggcccgatcggcgcgtttctccagcgcaccgtcgctcccgaagccctgcgcgac
cgcagcgtgacgatcacggtcaacgaaagcgtcgaaatcgcggacttagaaaagacactg
gcgggctttggttacgaccgcgtggaagccgtggagaatccggggcagtggacccggcgc
ggcggcattctggacatcttccccggcgactccctgcgcccgttccggatcgacttcttc
ggcgatgacgtggaaagcattcgcccgtttgatgtggaatcccagcgctcggtcggcaag
gtcgagacattagccgtccacgccgtgcgcgaagcgccgctgaccgaggacgccgtcgcc
gaggccgttgcgcgtctccagcgcgaactgcccgggcggatggcgcagctgcgcaagacc
aacgaagaggggcgcggcgccgagcacgcggaacgtctggaagagcgcatcgaagcggat
atcgcgcagctcagctcccgaacatattttgaccagacggagtactatctcccgtatctg
gagccgcgcgagatgtgcgccctggactatttgccggaaggcgcgctgctggtgctcgac
gagccgaaccaggcgaaggcgcgtctggagcagatcgaaaaggaagtgatcgagatcgcc
cagacgcgcgcggcgcggggcgagtggctgaccgatgaaactccgcacgcctgcggcttc
agcgccgttgtctcgcacgccgcgaagtctccggccacggtgatcttctcgctgctcggg
cagaaagtcgacggcctgcgcgcgtccgacccgatctccacgcagtcgggcgcgatggaa
agcttcgccggacgcttcccgtcgttctttgaagcgctggacggctggctcggcgcccgc
ttccgcgtcgtgctcgttaccgagcagtcccagaagatccgcgagctgctcgccgaccat
aagatcccggcgtcgccgcaggaccgcctccagcccggaggcgagggcggggtatacgtg
ctggacggcagcctgctcggcggctttaagctcgccgaagccgcgctgatggtcgcgacc
gacaccgatatcttcggccaccgcgctcatcagaagcccaagaagcgcgctttcaaagaa
ggtctcaaacttacctcctatctggagctgcgcgagggcgactatgtcgtccacatcaac
catggcatcggatattacgcgggcattacgcggctgaaaagcaaggacggcgccgagcgg
gattatctgctgctggagtatgccggcggcgacaaggtctatgtcccgacggatcaaatc
gaccgagtccagaagtacatcggctcccaggaatccacgcccaccgtcacgcgcctgaac
agcggcgagtggtcccgcgcgaccaagaaggcgcagaagcaagtccaggagatggcggcg
gacctgatcaagctctacgccgcgcgcaaggccgcgaccggccactccatcgccccggac
acgccgtggcaaatggagatggaggaggcgttcccgtatcaagagacgcccgatcagctc
gccgccatcgaagacgtgaagcgcgacctggaagacgacaaaccgatggatcgcctgatc
tgcggcgatgtcggctacggcaagaccgaggtcgcgatccgggccgccttcaaagtcgtc
aacgccggccgccaggtcgccgtgctctgcccgacgacgattctggctcagcagcatctc
gtcacgttccgcgagcggctggcccagtaccccgtcaagatcgagatgctttcgcgattc
gtctccaaggccgaggcggaccggacgatcaaggcgctggccgagggcaatgtcgatatc
gtcgtcggcacccacaaactgctcagcaaggacgtgaagttccgtaatctgggaatgctg
gtggtcgacgaggaacagcgcttcggcgtcgcgcacaaagagcgcatcaaggcgatcaag
aagaatgtggatgtgctgacgctgaccgcgacgcccatccccagaacgctgcacatgtcg
ctttccggcatccgtgatatgagtctgatcgacgatccgccggaaggccgccagccgatc
aagacatatgtcaaagagtacgacgacgaactgatccgtgaagtgatccttcgcgagctc
gaccggggcggacaggtctactatctgcacaaccggatcgaaagcatcacgcacgtcgcc
gagcatctgcgccgcctcgtttcgcaagcgaccgccgagatcgcgcacggccagatgcat
gaggacgacctggaagacgtgatgctgcgctttgcaaacaaggagttcaacattctcgtt
tgtacgacgatcgtcgagagcggcctggacatcccgaacgtcaacaccatcatcgtggac
aacgccgacaagctcggcctcgcgcaactctaccagctgcgcggccgcgtcggccgctcc
aagcggcagggttacgcctatctgctttaccggaaagacaaaattctctccgaaatcgcg
gaaaagcgcctgggcgccctgcgcgagttctccgacctcggctcgggatacaaagtcgcc
atgcgcgacctcgaaatccgcggcgccggcaacctgctcggcgccgcccaatcggggact
gtggcgacggttggcttcgatctctatacgcagctgctctcacaggcgatcaacgagctg
aagggcgaggatatggaagccgattgggagcttccgaatgtcgcgctgccgctcgacgcg
cacatcccgccgcgttacatcccgagcgaagccgagcgcatcctgatctacaagaagctc
accgccgtccgccgcatggaggatgtcgcgcgcattcaagaggagctcgaagaccgctac
ggcgatcccccgcgctccgtctggaacctgctcgccaccctgcgcctgcgtctgcgctgc
ctggaagtcggcatcggcaatatcgtcgccgaaaaacgccgcgtcgcgattcgttttcag
ggaacccacatcccgatggacacgatcaagaaactggcccgcctctacatgcagcaccag
ttcctccccgacgtcgtcttcctcgcgacccccgacactcccgcccgcatgctcacagcg
gtggaagaaatggtcgaagtcctcgccaaagccctccccaaagacggccagcccggcgtc
gtcgactcccccaaacagcccccgcgccccgtcggaagaaccggcgtacgcagcgcgtcg
gcgtaa
DBGET
integrated database retrieval system
