Capsulimonas corticalis: CCAX7_50720
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Entry
CCAX7_50720 CDS
T08728
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccot
Capsulimonas corticalis
Pathway
ccot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCAX7_50720 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccot03021
]
CCAX7_50720 (rho)
03019 Messenger RNA biogenesis [BR:
ccot03019
]
CCAX7_50720 (rho)
Transcription machinery [BR:
ccot03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CCAX7_50720 (rho)
Messenger RNA biogenesis [BR:
ccot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCAX7_50720 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_22
AAA_25
bpMoxR
ATPase_2
OB_RNB
NACHT
Spore_III_AA
AAA
AAA_14
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BDI33021
UniProt:
A0A402CPF7
LinkDB
All DBs
Position
complement(5978471..5979697)
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AA seq
408 aa
AA seq
DB search
MRTTMAHEDIESGAGRPEKDNGAPPPSQNNDGDAPAPLIRSGVLEILPDGWGFLRQNNFD
PNTQDIYVAQAQIKRFGLKTGDTVSGQVRPPKDTEKYYGLLRVESVNGVSPEQARNRVNY
DELIPIYPNDRLVLETDAKNLTARVIDLIAPIGKGQRAIIVAPPKAGKTTILKSIANSIT
QNHPEVVLMVLLIDERPEEVTDIRRSVNGEVVSSTFDELPENHMRVADMVLEKAKRLVES
GKDVVVLLDSLTRLSRASNLTVTPSGRTLQGGLDPAAIYRPKRFFGTARNIENGGSLTII
ATALVETGSRMDDIIFEEFKGTGNSELKLDREIANRRIFPAINVKESSTRKEELLYDDES
LKAVYQLHRVLAGLGTVEATELLIDRLNNSKSNKEFLRTVSKTGRRDD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccaccatggcacacgaggacatcgaatccggcgccggccggccggaaaaagac
aacggcgcgcccccgccgtctcagaacaacgacggagacgcgcccgcgcctttgatccga
tccggcgttcttgaaatcttgccggacgggtggggcttcctgcgccagaacaacttcgat
ccaaacactcaggacatctacgtggcccaggcccagatcaagcgcttcggtttgaagacg
ggcgacacagtctccggacaggtccgccctccgaaggacaccgaaaagtactacggcctt
ctgcgcgtcgaatccgtgaatggcgtttctcctgagcaagcgcgcaaccgcgtcaattac
gacgaactgatccccatctatcccaacgaccgcctggtgctcgaaacggacgcgaagaac
ctcacggcccgcgtcatcgatttgatcgcccccatcggtaagggacagcgcgcgatcatc
gtcgcgccgcccaaggccggtaagaccaccattctgaaatccatcgcgaactccatcacc
cagaaccacccggaagttgttctgatggtcctgctgatcgacgagcgcccggaagaagtg
acggatatccgccgctcggttaacggcgaagtcgtctcctccacctttgatgagctgccg
gagaaccatatgcgggtcgccgatatggtgctcgaaaaggcgaagcggctggtcgagtcc
ggtaaggatgtggtagtattgctggatagcctcacccgcctgtcgcgcgcgtcgaacctg
acggtgactccgtcgggacgcacgcttcaaggaggcctggatccggcggcgatttatcgg
ccgaaacgattttttggaacggcccgtaatatagagaatggcgggagcctgaccatcatc
gccaccgcgctggtcgaaaccggctcgcgcatggacgatattatctttgaagagttcaag
gggaccggcaactccgaactgaagctcgaccgtgagatcgccaaccggcgtatcttcccg
gcgatcaacgtgaaagagtctagcacccgaaaagaagaactgctttatgacgacgagagc
ctcaaggccgtctaccagctgcaccgcgttctcgcgggcctgggaacggtggaggcgacg
gagctgttgattgaccgattgaacaacagcaagagcaacaaagaattcctgcgcacggtc
agcaagacgggacgacgtgacgactga
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