Corynebacterium confusum: CCONF_01810
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Entry
CCONF_01810 CDS
T09352
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccou
Corynebacterium confusum
Pathway
ccou03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccou00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCONF_01810 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccou03021
]
CCONF_01810 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccou03400
]
CCONF_01810 (rpoB)
Enzymes [BR:
ccou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCONF_01810 (rpoB)
Transcription machinery [BR:
ccou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCONF_01810 (rpoB)
DNA repair and recombination proteins [BR:
ccou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCONF_01810 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WJY88921
LinkDB
All DBs
Position
375196..378675
Genome browser
AA seq
1159 aa
AA seq
DB search
MAVSRQTKSVANIPGAPKRYSFAKISEPIAVPGLLDLQLDSFAWLIGTPEWRERQQAERG
DGARVTSGLEDILEELSPIEDYSGNMSLSLSEPRFEPVKNTVDECKEKDINYSAPLYVTA
EFINNDTQEIKSQTVFIGDFPMMTDKGTFIVNGTERVVVSQLVRSPGVYFDQTIDKSTER
PLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSEEQIRERFGFSEL
MMSTLESDGVASTDEALLEIYRKQRPGEQPTRELAQSLLDNSFFRAKRYDLAKVGRYKVN
RKLGLGGDHDGLMTLTEEDIAVALEYLVRLHVGEGEMKAPNGEMISINTDDIDHFGNRRL
RTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFGTSQLSQ
FMDHNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHPSHYGRMCPVETPEGPNIGLIG
SLASYARVNSFGFIETPYRKVVDGKVTDQVEYLTADEEDRFSIAQAEVEQDAEGNIVGDR
IEVRQRDGDIAVTDASGVDYVDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPL
VRSEAPYVGTGMEQRAAYDAGDLVITPKAGVVEDVTADLITIMDDEGQRDTYMLRKFERT
NQGTNYNQTPLVSMGDRVEAGQVLADGPGTHNGEMSLGRNLLVAFMPWEGHNYEDAIILN
QRIVEEDILTSVHIEEHEIDARDTKLGAEEITREIPNVAEDVLSDLDERGIIRIGADVRP
GDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGEVGKVIGVARFSREDD
DDLAPGVNEMIRVYVAQKRKIQDGDKMAGRHGNKGVVGKILPPEDMPFMEDGTPVDIILN
THGVPRRMNIGQVLEVHLGWLAHAGWKVDVDDPANAELLQTLPEELYDVPADSLTATPVF
DGATNEEISRLLASSRPNRDGDVLVDGEGKATLFDGRSGEPYKYPISVGYMYMLKLHHLV
DEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTIKSDDVV
GRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLSTDGTPMELSGSDEDDMES
GSSLGINLSRDEGSAADIA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctcccgccagaccaagtcagtggccaatatccctggagccccgaagcgttat
tcgttcgctaagattagcgagccgattgcggttccgggcctccttgacttacaacttgat
tcttttgcatggctcatcggcacgccggagtggcgtgagcgccagcaggctgaacgcggc
gacggcgcgcgcgttacctctggcctggaggacatcctagaggaattgtccccgatcgag
gactactcaggcaatatgtccctgtcgctgtccgagccgcgcttcgagccggtgaagaac
accgtcgacgagtgtaaagaaaaggacatcaactactcggcgccgctctacgtgaccgca
gagttcatcaacaatgacacccaggagattaaatctcagacggtgttcatcggtgacttc
ccgatgatgaccgacaagggcacgttcattgtcaacggcaccgagcgtgttgtcgtctcc
cagctcgtgcgttccccgggcgtgtactttgaccagaccatcgataagtccacggagcgc
ccactgcactccgtgaaggtcatcccgtcccgcggcgcctggctcgaattcgacgtggac
aagcgcgacaccgtcggcgtgcgcatcgaccgcaagcgccgccagccggtcaccgtgctg
ctcaaggccctgggctggtccgaagagcagatccgcgagcgcttcggcttctccgagctg
atgatgtccaccctcgagtccgatggcgttgccagcacggacgaggctttgctggagatc
taccgcaaacagcgcccaggcgagcagccgacccgcgagctggctcagtccctgctggac
aactctttcttccgcgcgaagcgctacgacctggccaaggtcggccgctacaaggtcaac
cgcaagctgggcctgggcggcgaccacgacggcctgatgacgctgaccgaggaagacatt
gctgtcgcgctggagtacctggtgcgcctgcacgtcggtgagggcgagatgaaggcgccg
aacggtgagatgatctccatcaacaccgacgacattgaccacttcggtaaccgtcgtctg
cgcaccgtgggcgagctgatccagaaccaggtccgcgtgggcctgtcccgcatggagcgc
gttgtgcgcgagcgcatgaccacccaggacgcggagtccatcactccgacctcccttatc
aacgtgcgcccggtctcggcagctattcgcgagttcttcggtacctcgcagctgtcccag
ttcatggaccacaacaactcgctgtccggcctgactcacaagcgccgcctgtccgcgctg
ggcccgggcggcctgtcccgtgagcgcgccggcatcgaggtgcgagacgtgcacccgtcc
cactacggccgtatgtgcccggtcgagacgccggagggcccgaacattggcctgatcggc
tcgctggcctcctacgctcgcgtgaactccttcggcttcatcgagaccccgtaccgcaag
gtcgtcgacggcaaggtcaccgaccaggtcgagtacctgaccgccgacgaggaggatcgc
ttctccatcgcccaggccgaggtcgagcaggacgccgagggcaacatcgtcggcgatcgt
atcgaggtccgccagcgcgacggcgacatcgccgtgaccgacgcttccggcgtcgactac
gtggacgtctccccgcgccagatggtgtccgtggctaccgccatgattccgttcctggag
cacgacgacgccaaccgtgcactgatgggcgcgaacatgcagcgccaggcggtgccgctg
gtgcgctccgaggccccgtacgtgggcaccggtatggagcagcgcgcggcttacgacgcc
ggcgacctggtcatcaccccgaaggccggcgtggtcgaggacgtgaccgcggacctcatc
accatcatggacgatgagggccagcgcgacacctacatgctgcgcaagttcgagcgcacc
aaccagggcacgaactacaaccagaccccgctggtgtccatgggcgaccgcgtcgaggcc
ggccaggtgctggccgacggcccgggtacccacaacggcgagatgtcgctgggccgcaac
ctgctcgtggcgttcatgccgtgggaaggccacaactacgaggacgccatcatcctcaac
cagcgcatcgtcgaagaggacatccttacctccgtgcacattgaggagcacgagatcgat
gcccgcgacaccaagctgggtgccgaggaaatcacccgcgagatcccgaacgtggccgag
gacgtgctcagcgatctggacgagcgcggcatcatccgcatcggcgccgacgtccgcccg
ggcgacatcctggtcggtaaggtcaccccgaagggcgagaccgagctgaccccggaggaa
cgcctgctgcgcgccatcttcggagagaaggcccgcgaggtgcgcgacacctcgatgaag
gtcccgcacggtgaggtcggcaaggtcatcggcgtggctcgtttcagccgcgaagacgat
gacgacctggccccgggcgtcaacgagatgatccgcgtctacgtcgcccaaaagcgcaag
atccaggacggcgacaagatggccggccgccacggcaacaagggcgttgtcggcaagatc
ctgccgccggaggacatgccgttcatggaggacggtaccccggtcgacatcatcctgaac
acccacggtgttccgcgtcgtatgaacatcggccaggtcctcgaggtccacctcggctgg
ctggcacacgccggctggaaggtcgacgtcgacgacccggctaacgccgaactgctccag
accctgccggaagagctctacgacgtcccggccgattcgctgaccgccaccccggtcttc
gacggcgcgaccaacgaagagatctcccgcctgctggcatcctcccgcccgaaccgcgac
ggcgacgtcctggtcgacggcgagggcaaggccacgctgttcgacggccgttccggcgag
ccgtacaagtacccgatctcggtcggctacatgtacatgctcaagctgcaccacctggtg
gatgagaagatccacgcccgttcgactggtccgtactccatgattacccagcagccgctg
ggtggtaaggcccagttcggtggccagcgcttcggcgagatggaggtgtgggccatgcag
gcatacggcgcggcctacaccctgcaggagctgctgaccatcaagtcggacgacgtggtc
ggccgcgtgaaggtctacgaggccattgtgaagggcgagaacatcccggatccgggcatc
ccggaatccttcaaggtgttgctcaaggagctgcagtcgctgtgcctgaacgtggaggtc
ctgtccaccgacggcacgccgatggagctttccggctcggatgaagacgacatggaatcc
ggttcctcgctgggcattaacctgtcccgcgatgagggttccgccgccgacatcgcctag
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