Corynebacterium confusum: CCONF_01815
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Entry
CCONF_01815 CDS
T09352
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccou
Corynebacterium confusum
Pathway
ccou03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccou00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCONF_01815 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccou03021
]
CCONF_01815 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccou03400
]
CCONF_01815 (rpoC)
Enzymes [BR:
ccou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCONF_01815 (rpoC)
Transcription machinery [BR:
ccou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCONF_01815 (rpoC)
DNA repair and recombination proteins [BR:
ccou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCONF_01815 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WJY88922
LinkDB
All DBs
Position
378787..382779
Genome browser
AA seq
1330 aa
AA seq
DB search
MFDVNLFDELRIGLATAEDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHLELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDEEARHNDMSTLEGEMLLEKKDVEDDTEAEIAERASKLEAD
LAELEEAGAKADARRKVQNAADKEMQHVRERGEREVARLDEIWNTFVKLAPKQMIIDENI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLEAEAEVLRETINNGKGQKKMRALKRLKVVA
AFLRSGNDPAGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMMDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGSRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
SEVWDVLEQAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKTEDEIGGE
GRFHEAETDKPATGVYSSYAEALMARDRGVVGLQAPIKVRIDHLRPPEDIEAEQFPDGWE
RGQAWLAETTIGRIMFNELLPWNYPYLEGVMVRKGGSGNKVLLGDVINDLAVKYPMITVA
QVLDKMKDAGFYWATRSGVTITMSDVLVLPNKTEILESYEKEAERIERKYWVQGALTERE
RYDRLVELWKDATDTVGNAVENLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE
DCGTRQGVRVPIGTEVAEGQYTVHELWETSASGRVVASDVKDADGNVLAEAGSDLTESLT
NKLVQAGVQEIKVRSVLTCQTPAGVCAKCYGKSMASGHLVDIGEAVGIVAAQSIGEPGTQ
LTMRTFHQGGVGGDITGGLPRVQELFEARNPKNRAPIASVDGTVSLSDEGNFWTLTITPD
DGSDNVVYEKLSKRQGLAQVRRPMESNPDAMIERSLRDGDHVVTGERLMRGAADPHDVLE
VLGRRGVEKHLIDEVQAVYRTQGVAIHDKHIEIIIRQMLRRGTVIEAGSTEFLPGTLVDL
SEAKQINAAQVAEGGEPAQLRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSD
KLIGLKENVIIGKLIPAGTGISRYRNITVKPTEAARNAAYSIPTYSDTIYSDDSFGEFTG
ASVPLEEDFF
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgacgtaaacctcttcgacgagctccgcattggtctggccaccgctgaagacatc
cgtcgctggtccaagggcgaggtcaaaaagcccgagaccatcaactaccgaaccctgaag
ccggagaaggacggcctgttctgcgagcgcatcttcgggccgacccgcgactgggagtgc
gcctgcggtaagtacaagcgcgtgcgttacaagggcatcatctgcgagcggtgcggcgtc
gaggtcaccaagtccaaggtccgccgtgagcgcatgggccacctcgagctggccgctccg
gttacccacatctggtacttcaagggtgtgccctcccgcttgggctacctgttggatctc
gctccgaaggatctggagcgcatcatctacttcgcggccaacatcatcacatccgtggat
gaagaggcccgccacaacgacatgtccaccctcgagggtgagatgctgctcgagaagaag
gacgtggaggacgacaccgaggcagaaatcgccgagcgtgcgtccaagctcgaggccgac
ctggctgagctggaggaagccggcgccaaggcggacgcccgccgtaaggtccagaacgct
gcggacaaggagatgcagcacgtccgcgagcgcggcgagcgcgaggtcgctcgcttggac
gaaatctggaacaccttcgtcaagctggctccgaagcagatgatcatcgacgagaatatc
tacgaagagctcgtcgaccgctacgaggactacttcaccggcggcatgggcgcggaagcc
atccagacgctcatccgcaactttgacctggaggccgaggctgaggtcctgcgcgagacc
atcaacaacggcaagggccagaagaagatgcgcgccctgaagcgcctgaaggtcgtcgcc
gcgttcctgcgttccggcaacgacccggccggcatggtgttggacgctatcccggtcatc
ccgccggagctgcgcccgatggtgcagctggacggtggccgtttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcatgatggatctg
ggcgcgcccgagatcatcgtgaacaatgagaagcgcatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggcccgggctcccgcccgctgaaa
tccctgtccgacctgctcaagggcaagcagggccgcttccgtcagaacctgctgggtaag
cgcgtggactactccggccgttcggttattatcgtcggcccgcagctgaagctgcacgag
tgcggtctgccgaagctgatggcgctcgagctcttcaagcctttcgtcatgaagcgcctg
gtggaaaacgactacgcgcagaacatcaagtccgctaagcgcatggtggagcgccagcgc
tccgaagtctgggacgtgctggagcaggccatttctgagcacccggtgctgctgaaccgc
gcgccgaccctgcaccgcctgggcatccaggccttcgagccgaagctggttgagggcaag
gccattcagctgcacccgctggcttgtgaagccttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggcccaggccgaggcccgcgtgctcatgctg
gcctccaacaacattctgtccccggcctccggtaagccgctggctatgccgcgcctggat
atggtcaccggtctgtactacctgaccatggacaagaccgaggacgagatcggcggcgag
ggtcgcttccacgaggcggagaccgacaagccggccaccggcgtctactcctcctacgca
gaggcgctcatggcgcgcgaccgtggcgtcgtgggcttgcaggccccgatcaaggtgcgc
atcgaccacctgcgtccgccggaggacatcgaggccgagcagttcccggatggctgggag
cgtggccaggcctggctggcggagaccaccatcggccgcatcatgttcaacgagctgctg
ccgtggaactacccgtacctcgagggcgtcatggtccgtaagggcgggtccggcaataaa
gtgctgctgggtgacgtgatcaacgatctcgcagtcaagtacccgatgattaccgtggct
caggtcttggacaagatgaaggacgccggcttctactgggctacccgttccggcgtgacc
atcaccatgtccgacgttctggttctgccgaacaagaccgagatcctggagtcctatgag
aaggaagccgagcggatcgagcgcaagtactgggtgcagggcgccctgaccgagcgcgaa
cgctacgaccgcctggttgagctctggaaggacgccaccgacaccgtgggtaacgcggtg
gagaacctctacccggatgacaacccgatcccgatgatcgttaagtccggtgcggccggt
aacatgcgtcagatctggacgctggccggcatgaagggcatggtcgtgaactccaagggt
gactacatcacccgtccgattaagacctccttccgtgaaggcctgtcggtgttggagtac
ttcaacaactcgcacggttcccgtaagggcctggcggataccgcgctgcgtaccgccgac
tcgggctacctgacccgtcgtctggtcgacgtggcccaggacgtcatcgtccgcgaagaa
gactgcggcacccgccagggcgtgcgcgtgccgatcggcaccgaggtcgccgagggccag
tacacggttcatgagctgtgggagacctctgcttccggccgcgtggtggctagcgacgtc
aaggacgccgatggcaacgtgctggctgaggccggctccgacctgaccgagagcctgacc
aacaagctggtccaggctggcgtgcaggagatcaaggtccgctccgtgctgacctgccag
accccggctggtgtctgtgctaagtgctacggcaagtccatggcttccggccacctggtc
gatatcggcgaggccgtcggtattgtggccgcccagtcgattggtgagccgggtacccag
ctgaccatgcgtactttccaccagggcggtgtcggcggcgatattaccggcggtctgccg
cgcgtgcaggagctcttcgaggcccgtaacccgaagaaccgcgccccgatcgcctctgtg
gacggcaccgtgtccctgtcggacgagggcaacttctggaccctgaccatcactccggac
gatggttcggacaacgtggtctacgagaagctgtcgaagcgccagggcctggctcaggtg
cgccgcccgatggagtccaacccggacgccatgatcgagcgttccctgcgcgacggcgac
cacgtcgtcaccggcgagcgcctgatgcgcggtgcggccgacccgcacgacgtcctggag
gtcctgggtcgccgtggcgtggagaagcacctcatcgacgaggtccaggccgtgtaccgg
acccagggtgtggctatccacgacaagcacatcgagatcatcatccgccagatgctgcgc
cgtggcacggtcatcgaggccggctcgaccgagttcctgccgggcaccctggtggacctg
tccgaggccaagcagatcaacgccgcgcaggtggccgagggcggcgagcccgctcagctg
cgcagtgagatcatgggtatcaccaaggcctccctggctaccgagtcctggctgtccgcc
gcctccttccaggagaccacccgcgtgcttaccgatgccgctatcaacaagcgctccgat
aagcttatcggtctcaaggagaacgtgatcatcggtaagctgatcccggccggtaccggt
atttcccgctaccgcaacatcactgtgaagccgacggaggccgcccgcaacgcggcgtac
tccatcccgacctacagcgataccatctacagcgacgacagcttcggtgagttcaccggc
gcttccgtgccgctggaggaggacttcttctaa
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