Corynebacterium confusum: CCONF_06935
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Entry
CCONF_06935 CDS
T09352
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ccou
Corynebacterium confusum
Brite
KEGG Orthology (KO) [BR:
ccou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccou03019
]
CCONF_06935 (hrpB2)
Enzymes [BR:
ccou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCONF_06935 (hrpB2)
Messenger RNA biogenesis [BR:
ccou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CCONF_06935 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
NACHT
SLFN-g3_helicase
nSTAND_NTPase5
AAA_25
AAA_23
ABC_tran
PhoH
T2SSE
TsaE
Motif
Other DBs
NCBI-ProteinID:
WJY89909
LinkDB
All DBs
Position
1488866..1492804
Genome browser
AA seq
1312 aa
AA seq
DB search
MANTHKDPQEPREARDNSPAAPSRNDLYARLANVRSADEYSFRRRLKKARSPHALSAISA
DIDAAEERVRGIDRLVPEIVYPDSLPVSARRDDIAEAIDNNQVVIIAGETGSGKTTQIPK
ICLELGRGRRGLIGHTQPRRLAARTVAERIADELGQKIGQTVGYAIRFDDQVSKSTAVKL
MTDGILLAEMQRDRFLNAYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATI
DPERFAQHFASPEGPAPIIEVSGRTYPVEIRYRPLEFEAGDKVVDQDPLDGLVEALTELM
AEGDGDILCFFPGERDIRDAMEVIEAKKWKGVEVTPLFGRLSNQEQHRVFSPHSGRRIVL
STNIAETSLTVPGIRYVVDTGTARISRYSTRTKVQRLPIEPISQASANQRSGRCGRVADG
IAIRLYSEQDFLSRPEFTDPEILRTNLASVILQMISLRLGDISRFPFVQPPADKAVRDGI
ALLNELGALGTADKNGLPTLTKTGATLARIPVDPRMARMLVEAHKLGCLHDVIIIVAAMT
IQDVRERPLEKQAQADQAHARFKDKTSDFLSQLKLWDYIKDSRNEKSGNAFRKQMKAEFL
HYMRIREWFDLVRQLREVAKQLKWTAQESGKRADAAIHQALLSGLLSNIGARDGNSKEFH
GARNTRFMVFPGSALAKKPPEFVMAAELVETSRLWARDVAQIDPAWVERLAAGLLKHSYS
DPVWSSKRATTMVKQKSTLYGVPVVHDRSVPYHRVDQAAARDLFIRHALIGGEWNTHHSF
FHDNVAKLDKAAEYEDKARRRGLVADEDTLFAFYDERLPANITSGKYFDSWWKKERHAHP
ALLDFDPEALVNDADNRVTEADFPDTWRAGSMELDLSYHFSPGDPLDGVTIQVPVPMLAG
LETTGFDWLVPGLRLELVTELIRSLPKALRRTVVPAPEFAERALDKLVPYAGPITEQLAD
VLRELGGQGINAVDFRPQSLPDHLRMNYAAIDKRGKIIDSDRDLSALVHRQAGSIKSSVS
KVSRISESGAVKEWRSDNLGSIDDEVRTTVDGHEVTAYPALVATKDGVEVKAHPTKAAAD
AAMLTTTLTLLMREITVNPRPMVKGLPLQQRVAIDNYPHGGADGLVSDARVAALRDLLLE
AGGPVRSPEEFDQLRKKIAPAVPGRVRQMVVAIAPGLVEYGRITDELNKWTGPAIDDIRA
QLDFLLPAQAITKNGIEHLRHLPRYLQAVRIRLEEMNLDPDKDADRQAEVDEAKAYLNNR
LRSLPAGRAKTKAVRDIYWMIEELRVSLFAQRLGTAHAVSLRRIQKAVDKLA
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggctaatacacacaaggacccgcaagaaccgcgcgaggcgcgcgacaactctcccgct
gcgcccagccgcaacgatctgtacgcccgcctggctaatgtgcgcagcgccgacgagtac
tcgttccggcgccgcctgaaaaaggcgcgctccccgcacgcgctttcggcgatctccgcc
gacatcgacgccgccgaagagcgcgtgcgtggcatcgaccgcctcgtgccggagatcgtt
tacccggacagcctgccggtcagcgcccgccgggacgacatcgcggaggcaatcgacaac
aaccaggtggtcatcatcgccggcgagaccggctccggtaagaccacgcagatcccgaag
atctgccttgagctggggcgcggccgccgcgggctcatcggccacacgcagccgcggcgc
ctggcggcccgcacggtggccgagcggatcgccgatgagctgggacagaagatagggcag
accgtcggctacgccatccgcttcgacgaccaggtctccaagtccaccgccgtcaagcta
atgacggacggcatcctgctggcagagatgcagcgcgaccgcttcctcaacgcctacgac
accatcattatcgacgaggcccacgagcgctcgctgaacatcgacttcctgctgggttac
ctcaaacggctgctacccaagcgcccggatcttaaggtgattatcacctcggcgaccatc
gatcccgagcgcttcgcccagcacttcgccagcccggaaggccccgcgcccatcatcgag
gtctccggccgcacctaccccgtcgagatccgctaccgacccctggaattcgaggccggc
gacaaggtggtcgaccaggatccgctggacgggctcgtcgaagccctgaccgagctcatg
gccgagggtgacggcgatatcttgtgcttcttccccggcgagcgcgacatccgcgacgcc
atggaggtcatcgaggctaagaagtggaagggcgtggaggtcactcccctcttcggccgc
ctgtccaaccaggagcagcaccgggtctttagcccgcactcggggcggcggatcgtgctc
tctaccaatattgccgagacctccctgacggtacccggcatccgctacgtcgtggacact
ggcaccgcgcgtatctcgcgctactccacgcgcaccaaggtccagcgccttcctatcgaa
cccatctcgcaggccagcgcgaaccaacgctccggccgctgcggacgtgtagccgacggc
atcgccatccgcctctactcggagcaggactttttatcccgcccagagttcaccgacccg
gaaatcctgcgcaccaacctggccagcgtcatcctgcagatgatttccctgcggctgggc
gatatctcccgcttccccttcgtgcagccaccggcggacaaggcggtgcgcgacggcatc
gccctgctcaacgagctgggtgcgttgggtacggccgacaagaacgggctgcccacgctg
accaagaccggcgccacgctcgcgcgcatcccggtggatccgcgcatggcgcggatgctg
gtggaagcccacaagctgggctgcctgcacgacgtcatcatcatcgttgcggccatgacc
atccaggacgtacgcgaacgccccctggaaaagcaggcccaggcggaccaggcgcacgcg
cggtttaaggacaagacctcggatttcttaagccagctcaagctgtgggactacattaaa
gactcccgcaacgaaaagtccggcaatgccttccgcaagcagatgaaggcggagttcctg
cactacatgcgcatccgcgagtggttcgacctggtgcgtcagctgcgcgaggtcgccaag
cagctcaagtggaccgcccaggaatccggcaagcgtgccgatgccgccatccaccaggcg
ctcctgtcgggcctgctgtccaatatcggcgcccgagacggcaactccaaggagttccac
ggcgcccgcaacacgcgctttatggtcttccccggctccgcgctggcgaagaagccgccg
gagttcgtcatggccgccgagctggtggagacctcccggctgtgggcgcgcgatgtcgcc
cagatcgatcccgcctgggtagagcgcctggccgccggcctgctcaagcacagctactcc
gacccggtctggtcgagtaagcgggccaccaccatggtcaagcagaagtcgacgctctac
ggcgtgccggtggtccacgaccgctccgtgccctaccaccgcgtcgaccaagccgcggcc
cgggacttgttcatacgccacgctctcatcggcggcgagtggaatacccaccattccttc
ttccacgacaatgtcgccaaactcgacaaagcggccgagtacgaggacaaggcgcgccgg
cgcggcctggtcgcggacgaggacaccctcttcgccttctacgacgagcgcctgcccgcc
aatatcaccagcggcaagtacttcgactcctggtggaagaaggagcgccacgcccacccc
gcgctgctggacttcgatccggaggcgctggttaacgacgccgataaccgcgtgaccgag
gcggacttccccgatacctggcgcgccggttccatggagctggacctgtcgtaccacttc
agccccggcgatcccctggacggcgtgaccatccaggtccccgtgcccatgctggccggg
ctggagaccaccggcttcgactggctggtaccgggcctgcgcctggagttagtcacggag
ctcatccgcagcctgccgaaggccctgcgccgcacggtggtgcctgccccggagttcgcc
gagcgcgccctggacaagctggtcccttacgccgggcccattaccgaacagctcgccgat
gttctgcgggagctgggcggccagggcatcaacgccgtggatttccgcccgcagtcgctg
cccgaccacctgcgcatgaactacgcggccatcgacaagcggggaaagattatcgactcc
gaccgcgatctttccgcgctggtccatcgccaggccggttcgattaagtcctcggtctcg
aaggtcagccgcatctcggagtccggggcggtcaaggaatggcgctcggataatctgggc
tccatcgacgacgaggtccgcactacggtagacggccacgaggtcaccgcctaccccgcg
ctggtcgccacgaaggacggcgtcgaggtcaaggcgcaccccaccaaggccgcggccgat
gccgccatgctgaccaccacgctgaccttgctcatgcgggagatcaccgtcaacccgcgc
cccatggtcaagggcctgcccttgcagcagcgcgtggccatcgacaactacccgcacggc
ggggccgacggcctggtctccgacgcccgcgtggcagccctccgcgatcttctactggaa
gccggcggcccggtgcgctccccagaggaattcgaccagttgcgcaagaagatcgccccg
gcggttcccgggcgcgtgcggcagatggtcgtcgctatcgccccgggcctagtcgaatac
ggccgcatcaccgacgagctcaacaagtggaccggcccggccatcgacgacatccgcgcc
cagctggatttcctgcttccggcgcaagcaatcacgaaaaacggcatcgagcacctgcgg
cacctgccgcgctacctgcaagccgtgcgcatccggctggaggagatgaacctagatccg
gacaaggacgcggaccgccaagccgaggtcgatgaggccaaggcctacctcaacaatcgc
ctgcgctccctgccggccggccgcgcgaagaccaaagcggtgcgcgatatctactggatg
atcgaggagctccgggtttccctgttcgcccagcgcctcggcaccgcgcacgcggtctcc
ctgcggcgcatccaaaaggcggtcgacaagctggcctag
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