Corynebacterium coyleae: CCOY_01885
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Entry
CCOY_01885 CDS
T09177
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccoy
Corynebacterium coyleae
Pathway
ccoy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccoy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCOY_01885 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccoy03021
]
CCOY_01885 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccoy03400
]
CCOY_01885 (rpoC)
Enzymes [BR:
ccoy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCOY_01885 (rpoC)
Transcription machinery [BR:
ccoy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCOY_01885 (rpoC)
DNA repair and recombination proteins [BR:
ccoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCOY_01885 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WJY79001
LinkDB
All DBs
Position
395465..399463
Genome browser
AA seq
1332 aa
AA seq
DB search
MFDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDDEARHNDMSTLEAEMLMEKKDVEDDTNSEIADRAQKLEED
LAELEASGATAAARKKVQNAADKEMQHLREAGEREVERLDEIWTTFQKLAPKQMIIDENL
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELRGIIAEGKGQKKVRALKRLRVVA
AFQRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGTRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKRMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMLKGPQEIGGE
GAYAPADENGPERGVYSSYREAIMAYDLGVLGLQAPIKVRIDHLRPTEEIEAEQFPDGWT
KGQPWMMETTLGRIMFNELMPFNFPYQEGAMVRKGGGGGKVLLGDIIQSMVEQYPMITVA
QVLDKMKDAGFYWSTRSGVTISMSDVLILPNKNEVLEQYEKEAEAIERKFWEKGALTEEN
RYDRLVELWQDATNKVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRG
EYITRPIKTSFREGLSVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE
DCGTRQGVKVPVAVENAGVFHRHDLVETSVSGRVLAADVTDADGKVIAEAGTELTEQRID
DLVAAGIAEIKVRSVLTCQTPTGVCAKCYGKSMASGHLVDIGEAVGIVAAQSIGEPGTQL
TMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTISLEDEGNFWTLTIHPDD
GSDVVVYEKLSKRQGLAQVRRPMESNPDAMIERGLREGDHVEVGERLLRGAADPHDVLEV
LGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGTVIDSGTTEFLPGTLVDLS
EARQVNAAAVADGGEPAEMRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDK
LIGLKENVIIGKLIPAGTGISRYRNIQVKPTEAARSAAYAIPTFGDSIYGDEGYGEFTGA
SVPMEEFGYEEL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacgtaaacctcttcgatgagcttcgcatcggcctggccaccgccgacgacatt
cgccgttggtcccacggcgaggtgaagaagcctgaaaccattaactaccgcacgctcaag
ccggaaaaggacggcctgttctgcgagcgcatcttcggtccgacccgcgactgggagtgt
gcctgcggtaagtacaagcgtgtccgctacaagggcatcatctgtgagcgctgcggcgtc
gaggtgaccaagtccaaggtgcgccgtgagcggatgggccacattgagctggctgctccg
gtgacgcacatctggtacttcaagggtgtgccgtcgcgtctgggctacctgctcgacctg
gcgccgaaggatcttgagcgcatcatttacttcgcggcgaacatcatcacctcggttgat
gacgaggctcgacacaacgacatgtccaccctcgaggcggagatgttgatggagaagaag
gatgtcgaggacgacaccaactccgagatcgccgaccgtgcgcagaagttggaggaggac
ctcgctgagctcgaggcttccggtgcgactgctgctgcccgcaagaaggtgcagaacgct
gccgataaggagatgcagcacctgcgcgaggctggcgagcgcgaggttgagcgcctcgac
gagatctggaccaccttccagaagctcgctccgaagcagatgattatcgacgaaaacctc
tacgaggaactcgtcgaccgttacgaggattacttcaccggcggcatgggcgccgaggca
atccagaccctgatccgcaacttcgacctcgacgccgaggctgaggagctgcgtggcatc
atcgccgagggcaagggccagaagaaggtccgcgccctgaagcgtctgcgcgttgtcgct
gcgttccagcgctcgggcaacgacccggccggcatgatcctcgacgccattccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgttttgccacctctgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtttgaagcgcatgatcgacctg
ggtgcaccagagatcatcgtgaacaacgagaagcgcatgctgcaggagtccgttgacgcc
ctgttcgacaacggtcgtcgtggccgtccggtcaccggcccgggcacccgtccgctgaag
tcgctctctgacctgctcaagggcaagcagggccgcttccgccagaacctgctgggtaag
cgtgtggactactccggccgttccgtgattatcgtcggcccgcagctgaagctgcacgag
tgtggtctgccgaagcgtatggcgcttgagctgtttaagccgttcgtgatgaagcgcctc
gtcgataatgactacgcgcagaacatcaagtccgccaagcgcatggtggagcgtcagcgc
cctgaggtgtgggacgtgctcgaagaggcgatttccgaacacccagtgctgctcaaccgt
gcaccgacgctgcaccgtctgggtatccaggcgttcgagccgaagctggtcgagggtaag
gcaattcagctgcacccgctggcctgtgaagcgttcaacgccgacttcgacggcgaccag
atggcagtccacctgccgctgtccgcagaggcgcaggctgaggcccgcatcctgatgctg
tcctccaacaacatcctgtccccggcgtccggcaagccgctggcaatgccgcgcctggac
atggtgaccggcctgtacttcctgaccatgctcaagggcccgcaggagatcggcggcgag
ggcgcatatgcacctgccgacgaaaacggcccggagcgcggcgtctactcgtcctaccgt
gaggccatcatggcttacgacctgggcgtgcttggcctgcaggcaccgatcaaggtgcgc
atcgatcacctgcgtccgacggaggagatcgaggcagagcagttcccggatggttggacg
aagggtcagccgtggatgatggagaccacccttggtcgcatcatgttcaacgagctcatg
ccgtttaacttcccgtaccaggaaggcgccatggtccgtaagggcggtggcggcggcaag
gtgctgctcggcgacatcatccagtccatggttgagcagtacccgatgatcaccgtcgct
caggtgctggacaagatgaaggacgctggcttctactggtccacccgttccggcgtcacc
atctccatgtccgacgtgctgattctcccgaacaagaacgaagtcctcgagcagtacgag
aaggaagccgaggccatcgagcgcaagttctgggagaagggcgcgcttacggaggagaac
cgttacgaccgtctggtcgagctgtggcaggatgccaccaacaaggttggtcaggccgtc
gaggacctgtacccggacgacaacccgattccgatgatcgtgaagtccggtgctgcaggt
aacatgcgtcagatctggaccctggccggcatgaagggcatggtcgtgaactcgcgtggt
gagtacatcacgcgcccgatcaagacctctttccgcgaaggcctgtccgtgatggagtac
ttcaacaactcccacggttcccgtaagggtcttgccgataccgctctgcgtaccgctgac
tcgggctacctcacccgtcgtctggtggacgtggcgcaggacgtcatcgtccgcgaggag
gactgtggcacccgtcagggcgtcaaggttcctgttgccgtggaaaacgctggcgttttc
caccgccacgacctggtcgagacctctgtctccggccgtgttctggctgcggatgtcacc
gatgccgatggcaaggtcatcgctgaggctggcaccgagctcaccgagcagcgtatcgac
gacctcgtggccgccggcattgctgagatcaaggtccgctccgtgctgacctgccagacc
ccgaccggtgtctgcgcgaagtgctacggcaagtccatggcgtccggtcacctcgtcgat
atcggtgaagctgtcggcatcgtggctgcacagtccattggtgagccgggtacccagctg
accatgcgtaccttccaccagggtggtgtcggcggcgacattaccggtggtttgccgcgt
gtccaggagctcttcgaggcccgcgttccgaagaaccgcgccccgatcgcttccgtggcc
ggcacgatttcgctcgaggacgagggcaacttctggaccctgaccatccacccggatgac
ggttccgacgtggtggtctacgagaagctgtccaagcgccagggcctggcacaggtccgt
cgcccgatggagtccaacccggacgccatgatcgagcgtggcttgcgcgaaggcgaccac
gtcgaggtgggcgagcgcctgcttcgcggtgcggctgacccgcacgacgtgctcgaggtt
ctcggccgtcgcggtgtggagaagcaccttatcgacgaggtccaggccgtgtaccgcacc
cagggtgtgtccattcacgacaagcacatcgagatcatcatccgccagatgctgcgtcgc
ggcaccgtgatcgactcgggtaccaccgagttcctcccgggcacgctcgtggacctgtcg
gaggcacgccaggtcaacgccgcagcagtggcagacggtggggagccggccgagatgcgc
tccgagatcatgggcatcaccaaggcatcgctggctaccgagtcctggctgtcggccgcg
tccttccaggagaccacccgtgtgctcacggacgctgcgattaacaagcgctccgataag
ctcatcggcctgaaggagaacgtgatcatcggtaagttgatcccggctggtaccggtatt
tcccgttaccgcaacatccaggtcaagccgaccgaggcggcacgctccgcggcgtacgcc
atcccgaccttcggcgattccatctacggcgacgaaggctacggcgagttcaccggcgcg
tccgtgccgatggaagagttcggctacgaggagctctaa
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