Corynebacterium coyleae: CCOY_05140
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Entry
CCOY_05140 CDS
T09177
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccoy
Corynebacterium coyleae
Pathway
ccoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCOY_05140 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoy03019
]
CCOY_05140 (deaD)
03009 Ribosome biogenesis [BR:
ccoy03009
]
CCOY_05140 (deaD)
Enzymes [BR:
ccoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCOY_05140 (deaD)
Messenger RNA biogenesis [BR:
ccoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCOY_05140 (deaD)
Ribosome biogenesis [BR:
ccoy03009
]
Prokaryotic type
rRNA helicases
CCOY_05140 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Motif
Other DBs
NCBI-ProteinID:
WJY79640
LinkDB
All DBs
Position
1043723..1045864
Genome browser
AA seq
713 aa
AA seq
DB search
MSISENATGGENEPDMNVSENQENPQDVAAEIVEAVVEDTRDAEISEVTGAAQEEAAIEI
EDNVVKIADTDEESDNSDNAADTAEEKAEEVKPENGFETLGLPDKVVEAVKRVGFEQPSP
IQAQTIPLLMEGRDVVGLAQTGTGKTAAFALPVLSQIDPKKRHPQALVLAPTRELALQVS
DSFQSFADHLGGINVLPIYGGQAYGIQLSGLRRGAQVIVGTPGRVIDHLEKGSLDISNLR
FLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFSATMPNAIRKISRDYLNNPEEVTVK
SETRTNTNITQRYLFTAHRNKLDAITRILEVTEFEAMIVFVRTKNETEDVAEKLRARGFS
AAAINGDIPQQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVH
RIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNATIEEMELPTVDEVNESRKTKFMDSI
TESLEASELQIFKTMVREYSAANNVPMDDIAAALATQALAGDEFLMKEPPRDKRDRRDRR
DRDRFDRDDRRGRDRFDRGDRGGRGRRGDSENFDTYRLDVGKRQHVRPGAIVGALANEGG
LSSKDFGRITIGGDFTLVELPKNLDRAVLDRLEDTRISGQLINIQRDHGAPPRDRGGRGR
GGYRGGRDRDDRGYGGRGRGDRDRGGYRGGRDRDDRGYGGRGRGDRDRGGYRD
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgagcatttccgaaaacgccaccggcggcgagaacgagccggatatgaatgtgtcggaa
aatcaggaaaacccgcaggatgtcgcggccgagattgttgaggccgtagtagaggacacc
agggatgcggagatttctgaggtaaccggcgccgcacaagaagaagcggccattgaaatt
gaagacaacgtggtaaagatcgcggatacggacgaagagtccgataacagcgataacgct
gcagataccgcagaggaaaaggcagaagaggtaaagccggagaacggctttgaaaccctc
ggcctgccagacaaggttgtggaggccgtcaagcgcgtcggtttcgagcagccctcgccg
attcaggcacagaccatcccgctgctgatggaaggccgcgacgtcgtcggcctcgcgcag
acgggtacgggtaagaccgcagcattcgcgctgccggtgctgtcccaaattgatcccaag
aagcgtcacccgcaggcacttgtgctcgccccgacgcgtgagctggcactgcaggtgtcg
gactccttccaatcgtttgcagatcacctgggcggcatcaacgtgctgccgatctacggc
ggccaggcctacggcattcagctctcaggcctgcgccgtggcgcacaggtgatcgtcggt
acgccgggtcgcgtcatcgaccacctggagaagggctccctggacatctccaacctgcgc
ttcctcgtgcttgacgaggcagacgagatgctgaacatgggcttccaggaggatgtcgag
cgcatcctcgaggacaccccggatgagaagcaggttgcgctgttctcggcgacgatgccg
aacgcgatccgtaagatttcgcgcgactacctgaacaatccggaagaggtcaccgttaag
tcggagacccgcaccaacacgaacatcacccagcgctacctgtttacggcgcaccgcaac
aagctcgacgcgatcacccgcattcttgaggtgaccgagtttgaagcgatgatcgtgttc
gttcgcaccaagaacgagaccgaggacgttgcagagaagctgcgcgcacgcggtttctcc
gccgctgccattaacggcgatattccgcagcagcagcgcgagcgcacggtggatcagctt
cgcgacggccgcctggacatcctcgtggccaccgacgtcgcagcccgcggcctggacgtc
gagcgcatctcgcacgtgcttaactacgacattccgaacgacacggagtcgtacgtccac
cgcatcggccgcaccggccgtgcaggccgtaccggcgaggcaatcctctttgttaccccg
cgtgagcgccggatgctgcgctcgattgagcgcgtgaccaacgcgaccatcgaagagatg
gaactgccgactgtcgacgaggtcaacgagagccgcaagaccaagttcatggactccatc
accgagtcgcttgaggcttctgagctgcagatcttcaagaccatggtgcgcgagtactcc
gcggccaacaacgtgccgatggatgacattgccgcagcgcttgcgacccaggcgttggct
ggcgacgagttcctgatgaaggagccgccgcgcgacaagcgtgaccgtcgtgatcgtcgt
gaccgcgatcgttttgaccgcgacgaccgtcgtggccgtgaccgcttcgatcgtggggac
cgtggtggtcgtggccgtcgtggtgacagcgagaactttgatacctaccgtctcgacgtg
ggtaagcgccagcacgtgcgcccgggtgccatcgtgggtgccctggccaacgagggtggc
ctgagctccaaggacttcggacgcatcaccatcggcggtgacttcaccctggtggaactg
ccgaagaaccttgaccgcgctgtactggaccgtctggaggacacccgcatctccggccag
ctgatcaacattcagcgtgaccatggtgcaccgccacgtgatcgtggcggacgtggccgt
ggcggctaccgcggtgggcgcgaccgagacgatcgtgggtacggcggccgtggccgcggt
gaccgtgaccgcggtggataccgtggcgggcgcgaccgtgatgaccgcggttacggcggc
cgtggccgtggcgaccgggatcgcggtggataccgcgactag
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