KEGG   Chondrus crispus (carragheen): CHC_T00000005001
Entry
CHC_T00000005001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03030  DNA replication
ccp03410  Base excision repair
ccp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHC_T00000005001
   03410 Base excision repair
    CHC_T00000005001
   03450 Non-homologous end-joining
    CHC_T00000005001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccp03032]
    CHC_T00000005001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00000005001
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccp04147]
    CHC_T00000005001
DNA replication proteins [BR:ccp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CHC_T00000005001
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CHC_T00000005001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CHC_T00000005001
Exosome [BR:ccp04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   CHC_T00000005001
SSDB
Motif
Pfam: XPG_N XPG_I 5_3_exonuc
Other DBs
NCBI-GeneID: 17325439
NCBI-ProteinID: XP_005717721
UniProt: R7QKB7
LinkDB
AA seq 398 aa
MGIKGLTKLIGDNAPRAIKQQDAKALFGRKVAIDASMCIYQLLVAVRMGADNLTNEDGMV
TSHLNGLFYRTIRLIELGIKPIFVFDGKPPSMKGGELAKRAEAKKAAEEAAKKAEEDGNL
ELAEKFARRVNRITPEMMAACKTLVRAMGVPAVEAPCEAEAQCAELVKHGLAYATVSEDM
DSLTFGTNKLVRQLWSGVSASAQKKGHTPTEFSLDVLLEDLDLKMHEFVDLCILCGCDYV
DGIKGVGVVKALSLMREHKDLAKAVEALKRLDRYEVPDPYPVDALREMFFKPEITAAKDV
SLKWGKPDEAAIKKLMVEDNQFDETKIANGIKRLLLARKTSNQVRVDSFFKPKSAPNAGA
LAAKRKAAALAAKSKGKKRRSPGLSKGKIMKKGKLGNK
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgggtatcaaagggcttacaaagctcatcggcgacaacgccccacgcgccatcaagcag
caggatgccaaagcgctgttcggccgcaaggtcgccatcgacgcctccatgtgcatctac
cagctgttggttgccgtgcgcatgggcgccgacaacctgaccaatgaggacggcatggtc
acatcgcacctcaacggcctcttctaccgcaccatccgtctcatcgagctgggcatcaag
cccatattcgtcttcgacggcaagcccccgtccatgaagggcggcgagcttgccaagcgc
gccgaggcgaagaaggccgccgaggaggccgccaagaaggccgaggaggacggcaacctc
gagctcgccgaaaagtttgcccgccgcgtcaaccgcatcacccccgagatgatggccgcg
tgcaagaccctcgtccgcgccatgggcgtccccgccgtcgaggccccctgcgaggccgag
gcccagtgcgcagagctggtcaagcacggcctggcgtacgccaccgtcagcgaggatatg
gactcgctcacgtttggcaccaacaagctcgtgcgccagctatggtccggcgtcagcgcg
tccgcgcagaagaaggggcacacgcctaccgagttttcgctcgacgtcctgctggaggac
ctcgacttaaagatgcatgaatttgttgacctgtgcattttgtgcggttgcgattacgtc
gacggcattaaaggcgtcggcgtcgtcaaggccctcagcttgatgcgcgagcacaaggac
ctggccaaggcggtcgaggcgctcaagcgcttggacaggtacgaggtgccggacccgtac
cccgtggacgcattgcgggagatgtttttcaagcccgagatcacggctgctaaggatgtg
tctttgaagtggggtaaaccggatgaggcggccatcaaaaaattgatggtcgaggacaac
cagttcgatgaaacgaagattgccaacgggatcaagcggctattgttggctcgcaagacg
tccaaccaggtccgggtcgactctttttttaagcctaagagcgctccaaatgcgggtgct
ctcgcagcaaagcgtaaggccgcggcgcttgcggcaaagtcaaaggggaagaagaggcgg
agtccggggttgtcaaaagggaagattatgaagaagggcaagttggggaacaagtag

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