KEGG   Chondrus crispus (carragheen): CHC_T00000123001
Entry
CHC_T00000123001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K10606  E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03460  Fanconi anemia pathway
ccp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    CHC_T00000123001
  09124 Replication and repair
   03460 Fanconi anemia pathway
    CHC_T00000123001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccp04121]
    CHC_T00000123001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00000123001
Enzymes [BR:ccp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     CHC_T00000123001
Ubiquitin system [BR:ccp04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    CHC_T00000123001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    FA core complex
     CHC_T00000123001
SSDB
Motif
Pfam: FANCL_C FANCL_d3 FANCL_d2 FANCL_d1 SLX1_C zf-RING_2 PHD_NSD DUF3644 Med15_C zf-HC5HC2H zf-rbx1 UQ_con PHD
Other DBs
NCBI-GeneID: 17326783
NCBI-ProteinID: XP_005719063
UniProt: R7QKV4
LinkDB
AA seq 379 aa
MMQTQMLRRMLDDFPCMSPSDARFQRFHGFITISEREFRVSISSDCTYLSTDKSLKSIIS
PCFQKVRERLKLALNAHEFLLELRDIAEHQIDATRTDKQSVEFGLPPAQFYEQLLTDISH
MGWSCVASMSETMRALDLITRDAAGRTHSLNVSLPADYPKNPPKCVTNMPVEFEIQWGRD
STLISVLRQFEKLVAQYQDFFRTMEDLDKHAWVLEPEYPTTREVYRRVALGKTCSMRVEI
DHRAPLKSFPEIRFLGSEAAIEPFKQRLNQNIQHWDMTGQSLVRQNLERVLEITLPLPVD
KNAEDGEDSMLECGICYAYRLEESTPDVTCDLAECSKPYHRGCLVEWLRALPGTRESFGM
ITGNCVYCEESISVAVSAD
NT seq 1140 nt   +upstreamnt  +downstreamnt
atgatgcaaacacaaatgttacgtcgtatgctcgacgattttccctgcatgtctccgagt
gacgccagatttcagcgtttccatggtttcatcacgataagtgagagggagtttcgcgtt
tcaatctcctcggattgcacctatttgtcaaccgacaagtctctcaagtctattatctcg
ccatgcttccagaaagtccgcgaacgtctcaagttggctttgaatgcccacgagtttcta
ctcgaacttcgtgacatagctgagcatcaaatcgatgcaacaagaacagacaagcaatct
gtcgaatttggactgccgccggcgcagttttacgagcagcttctcacagacatatcccac
atgggttggtcctgtgtagcttctatgagcgagactatgcgcgcattggatctaatcaca
cgagatgccgccggtcgaacgcacagtctaaatgtctctctgcccgctgactacccgaaa
aatccccctaaatgcgtgacaaacatgcccgtcgagtttgaaatccaatgggggcgcgat
tctacattgatttctgtgcttcgccaatttgaaaagcttgtggcgcagtaccaagacttc
ttccggacgatggaggacttggacaaacacgcatgggtccttgaaccagaatatccgact
acccgagaggtttatagacgtgttgcgcttggaaaaacttgctccatgcgtgtggagatc
gaccatcgagcgccattgaagagcttccctgaaattcgatttctggggtcggaggccgcc
attgagccattcaaacaacgtttaaaccaaaatattcaacactgggatatgacgggacaa
tcgctcgtgcgccagaatttggaacgagttttggaaataacgttgcctctaccagttgat
aagaatgcggaagatggcgaagacagcatgcttgaatgcggaatatgttatgcatatcga
ctagaggaatcgacaccagacgtgacgtgcgacttggcggaatgctcgaaaccatatcac
agaggatgtctcgtagaatggttgcgggcgttacctgggactagggagagctttgggatg
attacagggaactgtgtgtattgtgaagaaagcatttccgtcgctgtttcagcagattga

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