Chondrus crispus (carragheen): CHC_T00000123001
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Entry
CHC_T00000123001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K10606
E3 ubiquitin-protein ligase FANCL [EC:
2.3.2.27
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03460
Fanconi anemia pathway
ccp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CHC_T00000123001
09124 Replication and repair
03460 Fanconi anemia pathway
CHC_T00000123001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccp04121
]
CHC_T00000123001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00000123001
Enzymes [BR:
ccp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
CHC_T00000123001
Ubiquitin system [BR:
ccp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
CHC_T00000123001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
CHC_T00000123001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FANCL_C
FANCL_d3
FANCL_d2
FANCL_d1
SLX1_C
zf-RING_2
PHD_NSD
DUF3644
Med15_C
zf-HC5HC2H
zf-rbx1
UQ_con
PHD
Motif
Other DBs
NCBI-GeneID:
17326783
NCBI-ProteinID:
XP_005719063
UniProt:
R7QKV4
LinkDB
All DBs
AA seq
379 aa
AA seq
DB search
MMQTQMLRRMLDDFPCMSPSDARFQRFHGFITISEREFRVSISSDCTYLSTDKSLKSIIS
PCFQKVRERLKLALNAHEFLLELRDIAEHQIDATRTDKQSVEFGLPPAQFYEQLLTDISH
MGWSCVASMSETMRALDLITRDAAGRTHSLNVSLPADYPKNPPKCVTNMPVEFEIQWGRD
STLISVLRQFEKLVAQYQDFFRTMEDLDKHAWVLEPEYPTTREVYRRVALGKTCSMRVEI
DHRAPLKSFPEIRFLGSEAAIEPFKQRLNQNIQHWDMTGQSLVRQNLERVLEITLPLPVD
KNAEDGEDSMLECGICYAYRLEESTPDVTCDLAECSKPYHRGCLVEWLRALPGTRESFGM
ITGNCVYCEESISVAVSAD
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaacacaaatgttacgtcgtatgctcgacgattttccctgcatgtctccgagt
gacgccagatttcagcgtttccatggtttcatcacgataagtgagagggagtttcgcgtt
tcaatctcctcggattgcacctatttgtcaaccgacaagtctctcaagtctattatctcg
ccatgcttccagaaagtccgcgaacgtctcaagttggctttgaatgcccacgagtttcta
ctcgaacttcgtgacatagctgagcatcaaatcgatgcaacaagaacagacaagcaatct
gtcgaatttggactgccgccggcgcagttttacgagcagcttctcacagacatatcccac
atgggttggtcctgtgtagcttctatgagcgagactatgcgcgcattggatctaatcaca
cgagatgccgccggtcgaacgcacagtctaaatgtctctctgcccgctgactacccgaaa
aatccccctaaatgcgtgacaaacatgcccgtcgagtttgaaatccaatgggggcgcgat
tctacattgatttctgtgcttcgccaatttgaaaagcttgtggcgcagtaccaagacttc
ttccggacgatggaggacttggacaaacacgcatgggtccttgaaccagaatatccgact
acccgagaggtttatagacgtgttgcgcttggaaaaacttgctccatgcgtgtggagatc
gaccatcgagcgccattgaagagcttccctgaaattcgatttctggggtcggaggccgcc
attgagccattcaaacaacgtttaaaccaaaatattcaacactgggatatgacgggacaa
tcgctcgtgcgccagaatttggaacgagttttggaaataacgttgcctctaccagttgat
aagaatgcggaagatggcgaagacagcatgcttgaatgcggaatatgttatgcatatcga
ctagaggaatcgacaccagacgtgacgtgcgacttggcggaatgctcgaaaccatatcac
agaggatgtctcgtagaatggttgcgggcgttacctgggactagggagagctttgggatg
attacagggaactgtgtgtattgtgaagaaagcatttccgtcgctgtttcagcagattga
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