Chondrus crispus (carragheen): CHC_T00001277001 Help Entry CHC_T00001277001  CDS       T02916                                  Name (RefSeq) hypothetical protein   KO K14327   regulator of nonsense transcripts 2 Organism ccp  Chondrus crispus (carragheen) Pathway ccp03013   Nucleocytoplasmic transport ccp03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:ccp00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CHC_T00001277001    03015 mRNA surveillance pathway     CHC_T00001277001  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccp03019]     CHC_T00001277001 Messenger RNA biogenesis [BR:ccp03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CHC_T00001277001    mRNA cycle factors     P-body specific factors      CHC_T00001277001 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  MIF4G Upf2 Motif Other DBs NCBI-GeneID:  17326467 NCBI-ProteinID:  XP_005718751 UniProt:  R7QMY7 LinkDB All DBs AA seq 1434 aa AA seqDB search MSSAPRDEGGRARRRRRRGPASASRTDPNNTNPNRPPRRSPQPHQRGHHQQQPPQALQSQ HIDSLSFSASGITTIPQRNVRDNSRQRQSNPHADTLKNEAKTSQASRAAQGKQNAIDEQK RKKEEEERKEKEARELKERAEREEREATLARQLEKQHQQRILNLSYRPRKPSQPPEKERP SDAQLRQLDSSLKKCTGFLRKIRSSGINEESLPSLCREAQSLNLSRYISEVVAAISETKL RYADVEHATVLTGELYRRYEDFVTQLVAALGAIILSQPNNAPGRDVGSRKAAMRLLVEIF VLGMVADVSPITNVLKQLVRVQKDARDESLSHLSIITTFVRTGGRTMLSQVSKPTSESSS SHDLEEMGEDWRDSVLSQSTKGSITLAFQSYYDAEVNRLLTEAAEELDKAYIAVTRSKDV RGDPDEAATATYESARQGYEKVYASARVLADALGKRLPESVLSITQGTSSTVESSTPRDT AQGAAINSIQYVGRNRIVQESDFLLQGESPFDGEEERLFYTMLPILKQKGSSASEDGKSI GLLVNGTVPEPDASDSATKTASSGGKKVESRQSPVAKNTVEGRQKGSDKPASVEKVLGQL STVESKESVDAFVSHFVDTAESSKNGSKRLAKSLSSVSAQKLNLLPTYSRIAACLYPSFS DIAISVASHLEEEFRYLAGRSDMDEKNLAVCIKNAKYVGEYVKFGLIESSSMFDLLNLCM KDFTGHRVDIACHLLETCGRFLYRTPATHVRMGNILETIWRLKSVKNMEARHNALVETAY FASKPTSASKLQKRKSRPPIHEYIRHLIYYRLDATNIKWTQTQLMKLPWNDDLEHYVIKK FVKISRARFSTIPYVSTLISLLQRFKPGLVIGIVDALLEAIRCGMEKNDGRDSQRRIAEI QLLGELHKCGVVDEGLVYNVLYQSIILGHDRSEVASTQILPTDETSRSERASLSRAGAGS AVPTSTFTNAPDPPGDFFRVRIACVLLESCGRILVASNRRKVEVFWIFFERYTFYKARQA GLGDRLPLHISHVVGDAFENILLRDRRYGRDNRMRKENETFIRTRSGQSHTRQYSPSARF FRSSSLSEAIEAVQQVENSISDRVLICVPVRHIYQNCAPLNGTRPSSGASLNDAPGLHSI SRTEKQPGLSETDSSEGSNNDGADSDTEGVTSELSENGMLGEREDLFSGDDLTEENELPR NAIDGEGNRGEDSEHDECEDVDDEDDEDDSSVEVQVERPKTEEEDAFAKELAAFTADAVQ TARATSSRITKFDRMAIPMSLMAKKMEEERAARAAAAANLHLNSESDDSDDRMGNSSLTK MKRRSPSQSVGFKVLVRKGGKSQLQDLEVPASSSLAVAAKENETADAARHEETKRLVLGS SIVLNHDEEDLDEEVPLRTQQNVRAKEESIRLQRSADEMALLSAVYHHRPNTRR NT seq 4305 nt NT seq  +upstreamnt  +downstreamnt atgagctcagccccgagggatgaaggaggtagggctcggcgccgcaggaggagaggtccc gcctccgcgtctcgcacagaccctaacaatacaaacccgaacaggcctccccgccgttca ccccagccacatcagcgaggacatcaccagcaacaaccgccgcaagcactccaatcccag cacattgactccttgtccttttcggcctcaggaattactactattccgcagcgaaacgtg agggataattcgcgccagcgccagagcaacccccacgcagatactctcaaaaacgaagcg aagacgtcgcaggcgtcgcgcgcggctcaggggaagcaaaacgcaatcgatgaacagaaa agaaagaaagaggaagaggaaagaaaagaaaaggaagcacgcgaacttaaagagcgtgca gagcgagaagagcgagaggcaactttggctcgccaactcgaaaagcagcaccagcaaaga attctcaacctgtcgtacaggccgcggaagccatcccaaccccctgaaaaggagagaccc tcagatgcccaactgcgtcaactcgattcttctctaaagaaatgcaccggtttcttgcgc aagattcgctcctcaggaatcaatgaggaatctctcccgtctttatgccgtgaagctcag tctctcaatttgtcacgatacatatcagaagtcgtcgctgccatctcggagacaaagctg agatacgccgacgtggagcatgccaccgtcttaaccggagagctttacagaaggtatgaa gattttgtcactcagctcgttgcagcgttaggagccattattctctcgcaacccaataat gcgcccggaagagacgtcggctctagaaaggccgccatgcgattactcgtagaaatattc gtccttggtatggttgcagatgtatcaccaattacaaacgtgttgaagcagctagtacgt gttcaaaaggacgccagagatgagtcgctgtcacatctgtcgataatcacaacctttgtt cgcacgggagggcgaaccatgctctcacaagtttcaaagccaacctcagagtcgtcctcc tcccatgacttggaagagatgggcgaggattggagagacagtgtgctgtcgcagagcaca aagggaagtattacgctcgcatttcaatcttattacgacgcagaagtgaatcgactcttg actgaggccgcagaggaattggacaaagcatacatcgctgtaactcggtctaaagatgtc cggggcgatcctgacgaagccgccactgctacatacgaatctgcgagacagggttacgaa aaggtttatgcttctgctcgtgtcttggctgatgcattgggcaagaggctaccggaatcc gtcttaagcatcacacagggaacgagttccacagttgagtctagtaccccgagggataca gcccagggtgctgcgattaactcaatacagtatgttggccggaatcgtatcgtgcaagaa tccgatttccttctgcaaggtgagagcccattcgacggggaggaagagagattgttttac accatgttacctatcctcaagcaaaaaggaagcagtgcgtctgaggacggcaaatctatt gggctcctcgtcaacggtactgttcccgaaccagatgcgtcggattcagcaacaaagacg gcatcatccggtgggaaaaaagtggagtcaagacaatcgcctgtcgcgaagaatactgtg gaaggtcggcagaaaggctcggacaaacctgcttcagtcgaaaaagtacttggtcagctt tctactgtggaatcgaaggaaagcgttgatgcgtttgtgtcgcactttgtcgatacagca gaatcatcaaagaatggttccaagcgtctagcaaagtctctttcttcggtttccgcacaa aagctaaatttgcttcctacgtatagtcggattgcggcatgtctgtacccttcattcagc gacattgcaataagcgtagcatcgcatcttgaagaagaatttcgatatctcgccgggcga tcagatatggacgagaaaaatcttgctgtctgtatcaagaatgcgaagtacgttggcgag tatgtcaaatttggccttattgagagtagctctatgtttgatttgctcaacctgtgcatg aaggactttaccggtcatcgggttgatattgcttgccatctattggagacgtgtggacgc ttcctgtaccgaactcccgcgacccatgtaagaatgggcaatatccttgaaacgatatgg cgcctgaagtctgtgaagaacatggaagctcgccacaatgccctcgttgagactgcctac tttgcttcaaaaccaacatcagccagcaagttgcaaaagcgaaagagccgaccgccaata catgaatatatccgtcatctcatatactatcgcctggacgccacaaatataaaatggaca cagactcagctgatgaagctaccctggaatgatgacttggaacactatgtgatcaagaaa ttcgtgaagatatctcgagcgaggttttccaccattccttatgtctctacactcatctca ttgttgcaaaggttcaagcctggtctggtaattggaatcgttgacgccttgttggaagca atacgatgtggaatggagaaaaacgatggcagagatagccagcgaaggatagcagaaatc cagttgcttggggaactacacaaatgtggtgttgtagatgaaggattggtgtataacgtt ctctatcaaagcatcattttgggccacgacagatccgaagtggcatccacacagatcctg ccaactgatgaaacatctcggtctgaacgcgcctccttgagccgcgctggcgctggtagc gccgttcccacttccactttcacaaatgctccagatccccctggtgacttttttcgggtg agaatagcctgcgtcctgctggaatcatgtggacgtattcttgtggcatcgaacaggcgc aaagttgaagttttctggattttctttgagcgctatacgttttataaggctcgacaagca gggcttggagatcggcttccgctgcacataagccatgtggttggggacgcttttgaaaac attctcctcagggaccgccgatatggcagggacaatcgaatgcgcaaagaaaatgagacg ttcattaggactcggtcggggcaaagccacacacgtcaatacagtccttctgcaagattt tttcgtagctcttctttaagcgaagcaattgaagctgtgcaacaggtcgagaactctatt tctgacagagtcctcatatgtgtcccagtccgtcatatttatcaaaattgtgctcctctg aatgggactcggccaagttctggtgcttctctaaatgatgctccagggcttcattccata tctcgaacagaaaaacagcccggcctttctgagacagacagttctgagggcagcaacaac gacggggctgattcagacacggaaggggtaaccagcgaactatcagaaaatggtatgctt ggcgaaagagaggacctgttctctggagacgacctcaccgaagaaaatgagcttcctcgc aatgctatcgacggcgagggaaacagaggagaagatagtgaacatgatgaatgcgaggat gttgatgacgaagacgacgaagatgatagttcagtggaagtgcaagtggaacgacccaaa actgaagaagaagatgcgttcgcaaaggaacttgccgcgttcacagctgacgctgttcaa acggcaagggcaacttcatcaaggataacgaagtttgatcgcatggcaattccgatgtca ctaatggcgaagaagatggaagaggaaagggcagctcgtgctgcggctgcagccaatcta catctgaattcggagtctgacgattctgatgatcgcatggggaacagcagtctaacgaaa atgaaacgacggagtccgagtcaatctgttggtttcaaggtccttgtgcgcaaaggaggt aaaagtcagttgcaagacctcgaggtgccagcatccagctcccttgccgtcgccgcaaaa gaaaacgaaactgcagatgctgctcgtcacgaagaaacaaaacggcttgttcttggaagc agcattgtactcaaccatgacgaagaagatctagacgaggaagttccacttcgcacccaa caaaatgtgcgagcaaaagaggagagcattcgattgcagaggtcggctgatgaaatggct cttctttccgctgtgtaccaccaccggccaaacacccgtcgttga

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