KEGG   Chondrus crispus (carragheen): CHC_T00001503001
Entry
CHC_T00001503001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K14549  U3 small nucleolar RNA-associated protein 15
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    CHC_T00001503001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ccp03009]
    CHC_T00001503001
Ribosome biogenesis [BR:ccp03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    CHC_T00001503001
SSDB
Motif
Pfam: UTP15_C WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st EIF3I Beta-prop_TEP1_2nd WDR90_beta-prop_4th Beta-prop_EML Beta-prop_SCAP WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_Vps41 DUF5122
Other DBs
NCBI-GeneID: 17319936
NCBI-ProteinID: XP_005712205
UniProt: R7Q520
LinkDB
AA seq 522 aa
MGEAFAPLLVPRPGSLSTPFRLHQEASLWSSVGLVASHHLLSPVTHVTFSPVAPYDVAAS
SGFSVELIGSRAGNRLRSLARFRDTAYSPGYKPDGKLLVAGDSGGGARVFDLGSRAVLRE
FKGHKGPVRSAMFSSDGRRVMTGSDDSVVKAWDLATSRLLLSLKDANDYVRCQAHSPASQ
HVWMVGSLDRKARLYDLRSTNCLFTLDHGYQVDDVLILPGGARAITIGGPEVKIWDFFSG
GKMIHRLGSHAKAVTSGVADVAGHCLATAGLDGVVKVHDLDTFQAKGRMRFASEILSLAV
SSDGVKYAAGMADGTVEVRSTKTSSKHISSVPQSTARRQREFEGYGRGFEKMRMEEKGPK
PGSRRYFERGTRAKPTEDQDFVMKDYRKAELKDYDKSLQKFAHGDAIDQAVATRSPSVVI
SVVQELLTRGVLTSALAGHKQSSLDSILGVIQRNIRKPLYTNRLAQLLNAILDVYGAELG
KNIAVDRKLGAILSAVRREVNECHDLMQLQGAAEAILSSSGS
NT seq 1569 nt   +upstreamnt  +downstreamnt
atgggcgaagcattcgccccccttctcgtcccgcgtcccggctcgctcagcacccccttt
cgcttgcaccaagaggcctcgttgtggagttctgtcggcttggtcgccagccaccacttg
ctttccccggttacgcatgtcaccttttctcccgtcgctccttatgatgtcgccgcttca
tccggcttctccgtcgagctcattggctcccgagctgggaatcgcctgcgctcgcttgcc
aggttcagggacaccgcctacagccccggctataagcctgatggcaagctgctcgtcgcc
ggggatagtggcgggggtgcaagagttttcgatcttgggagtcgcgctgtccttcgagag
ttcaaaggtcacaaaggccctgttcgatccgcgatgtttagctcggacgggcgtcgcgtc
atgaccgggtcggatgactctgtcgtcaaggcatgggacttggccacaagccggttgctt
ctctccctgaaagacgcaaatgattatgttcgatgccaggcccactctccggcctcccag
cacgtctggatggttggctccctggatcgtaaggcccgcctgtacgacttgcgctccacg
aactgcctgttcactctcgaccacggttaccaggtggacgacgtcctcattcttccggga
ggcgccagagccatcactatcggcggaccggaagtgaaaatttgggactttttctctggt
ggcaagatgatccacaggctgggttcgcacgccaaagctgtcacctctggagtggctgat
gtggcggggcactgcctcgccacagctggtttggatggtgttgtcaaggtacatgattta
gacactttccaggcaaagggacgcatgcgctttgcgtcggagattctttctcttgctgtt
tcgagcgacggagtgaagtacgccgctggtatggcggacggtactgtggaggtgcgctct
acaaagacatctagtaagcacatctcctcggttccccagagcacggctcgcagacaacga
gaatttgaggggtacgggaggggttttgaaaagatgcgaatggaggagaagggccctaaa
ccggggtctcgtcgatactttgaacgaggcacacgtgcaaagccaactgaagaccaagac
tttgtcatgaaagattatcgcaaagcggagctgaaagattatgacaagagtttgcagaaa
tttgcccatggggacgcaattgaccaagcagtagccacgcgaagcccttccgtggtgatc
agtgtggttcaggaactcctaacaagaggcgtgctgacaagtgcgctagctggccataag
cagtcatcgcttgactcaattctaggcgtgatacagcgaaatatccgcaagccgctgtac
actaatcggctcgctcagttgctgaacgccattcttgatgtttacggggcggagttgggc
aaaaatatcgcggtggataggaaacttggagcaattctgagcgctgtcagacgagaggtc
aatgaatgccacgacttgatgcaactacaaggagcggctgaagccattttgagctcgtct
ggatcatga

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