Chondrus crispus (carragheen): CHC_T00001503001
Help
Entry
CHC_T00001503001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CHC_T00001503001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccp03009
]
CHC_T00001503001
Ribosome biogenesis [BR:
ccp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
CHC_T00001503001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP15_C
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
EIF3I
Beta-prop_TEP1_2nd
WDR90_beta-prop_4th
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
DUF5122
Motif
Other DBs
NCBI-GeneID:
17319936
NCBI-ProteinID:
XP_005712205
UniProt:
R7Q520
LinkDB
All DBs
AA seq
522 aa
AA seq
DB search
MGEAFAPLLVPRPGSLSTPFRLHQEASLWSSVGLVASHHLLSPVTHVTFSPVAPYDVAAS
SGFSVELIGSRAGNRLRSLARFRDTAYSPGYKPDGKLLVAGDSGGGARVFDLGSRAVLRE
FKGHKGPVRSAMFSSDGRRVMTGSDDSVVKAWDLATSRLLLSLKDANDYVRCQAHSPASQ
HVWMVGSLDRKARLYDLRSTNCLFTLDHGYQVDDVLILPGGARAITIGGPEVKIWDFFSG
GKMIHRLGSHAKAVTSGVADVAGHCLATAGLDGVVKVHDLDTFQAKGRMRFASEILSLAV
SSDGVKYAAGMADGTVEVRSTKTSSKHISSVPQSTARRQREFEGYGRGFEKMRMEEKGPK
PGSRRYFERGTRAKPTEDQDFVMKDYRKAELKDYDKSLQKFAHGDAIDQAVATRSPSVVI
SVVQELLTRGVLTSALAGHKQSSLDSILGVIQRNIRKPLYTNRLAQLLNAILDVYGAELG
KNIAVDRKLGAILSAVRREVNECHDLMQLQGAAEAILSSSGS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaagcattcgccccccttctcgtcccgcgtcccggctcgctcagcacccccttt
cgcttgcaccaagaggcctcgttgtggagttctgtcggcttggtcgccagccaccacttg
ctttccccggttacgcatgtcaccttttctcccgtcgctccttatgatgtcgccgcttca
tccggcttctccgtcgagctcattggctcccgagctgggaatcgcctgcgctcgcttgcc
aggttcagggacaccgcctacagccccggctataagcctgatggcaagctgctcgtcgcc
ggggatagtggcgggggtgcaagagttttcgatcttgggagtcgcgctgtccttcgagag
ttcaaaggtcacaaaggccctgttcgatccgcgatgtttagctcggacgggcgtcgcgtc
atgaccgggtcggatgactctgtcgtcaaggcatgggacttggccacaagccggttgctt
ctctccctgaaagacgcaaatgattatgttcgatgccaggcccactctccggcctcccag
cacgtctggatggttggctccctggatcgtaaggcccgcctgtacgacttgcgctccacg
aactgcctgttcactctcgaccacggttaccaggtggacgacgtcctcattcttccggga
ggcgccagagccatcactatcggcggaccggaagtgaaaatttgggactttttctctggt
ggcaagatgatccacaggctgggttcgcacgccaaagctgtcacctctggagtggctgat
gtggcggggcactgcctcgccacagctggtttggatggtgttgtcaaggtacatgattta
gacactttccaggcaaagggacgcatgcgctttgcgtcggagattctttctcttgctgtt
tcgagcgacggagtgaagtacgccgctggtatggcggacggtactgtggaggtgcgctct
acaaagacatctagtaagcacatctcctcggttccccagagcacggctcgcagacaacga
gaatttgaggggtacgggaggggttttgaaaagatgcgaatggaggagaagggccctaaa
ccggggtctcgtcgatactttgaacgaggcacacgtgcaaagccaactgaagaccaagac
tttgtcatgaaagattatcgcaaagcggagctgaaagattatgacaagagtttgcagaaa
tttgcccatggggacgcaattgaccaagcagtagccacgcgaagcccttccgtggtgatc
agtgtggttcaggaactcctaacaagaggcgtgctgacaagtgcgctagctggccataag
cagtcatcgcttgactcaattctaggcgtgatacagcgaaatatccgcaagccgctgtac
actaatcggctcgctcagttgctgaacgccattcttgatgtttacggggcggagttgggc
aaaaatatcgcggtggataggaaacttggagcaattctgagcgctgtcagacgagaggtc
aatgaatgccacgacttgatgcaactacaaggagcggctgaagccattttgagctcgtct
ggatcatga
DBGET
integrated database retrieval system