Chondrus crispus (carragheen): CHC_T00001865001
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Entry
CHC_T00001865001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CHC_T00001865001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00001865001
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00001865001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
CHC_T00001865001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
CHC_T00001865001
PBAF complex
CHC_T00001865001
GBAF(ncBAF) complex
CHC_T00001865001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_2
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
SWIRM-assoc_1
Motif
Other DBs
NCBI-GeneID:
17320566
NCBI-ProteinID:
XP_005712850
UniProt:
R7Q3C6
LinkDB
All DBs
AA seq
1020 aa
AA seq
DB search
MGPLGASIRALRPRCGLLEPDIPPVAVRVSRYATISKALSRSAVDSRHCTEKKLSKLVLS
LRSFMDEHFGRTAKPETRTKLTMFPTSIFADFSEFGPLCALLKVCFRYAAEHGLLPLNFD
DASKEDDLLRLIFHAEKTLKKDHFFRVIKIFISPLIEQEESESLRATAQRHGAAVVSNSH
VATHLIYPDPDGTRENQTDGQALVRVLERTDFRGETFAFLHWLHHPDSYNDWVPASEILG
HVYIPRRRKEREQWHVQARWLRDLALYNDWMNELDYEMPQDFPDLAGLSPKTVELDAKGH
EPRALVKIRLRMPREDEIGKQASLLGASKGVALPPHANGFADASDMRDANGDHAMIDVGD
LSDEDADGYRHPNESNGSSSAPGSGTTTGQTTKISVGDGVFIPFFSKWFRIQSVHDIERR
ALPEFFEQRYASKNEDTYKETRNFMISTWRQGRNEYLSSTAVRRHLAGDACAVLRLHGFL
EHWGLINYECSAQGAAPASFIPPPRALPLRAGHERDDSVRANAQIVLDDGSRPAIEGGKV
VKYGRNDEVVGNSTSEAVLIRDSDRMGQALPIAESPAREPIEYHCDSCGVDCSVLRFHCA
TKADVDLCASCYQNAKYSSSMKPRDFIQMNSAGAHGGPDETEGDVWTESETLLLLEALEM
YGDNWTLVSEHVGSKGNSQCVIQFLRLPIEDSFLNTTARSWWSVAPPGNGDESSPLDMLR
AAGAREAALAKVNTTKSSEISLSGQPLVFGDQISTIMPFASKLVSLCPPDTVKELTRVFG
VGSSRKRQRSYLDVFLKESCRRTDKNNDSGKEESLEDLVGCFTTNRVYKKMRKMIPTPAS
FLRTEKGDKVGRATFSLVRHGAIQSNEAIRLLLDPSPSALHQMERPDRGSAAEHVERAAP
AVEKASKTKPKCDDHDISESEKPDSASDEGIEEPAALAITSLSAAAASASYMQELEEAEI
DRLYSFLSEIRVQLIERRIAHLESITEYESFADGYKEKKLNEEMSRSILRRKESLLSCQY
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgggaccgctcggcgcctcaattcgcgccttgcgacctcgctgtggcctgcttgagcct
gacattcctcccgtcgcggtccgcgtctcccgctacgcaaccatctccaaggctctgagc
cgcagtgctgtcgattcccgccattgtacagagaaaaagctttccaaattggttctcagc
ctgcgcagctttatggacgagcattttggccgcaccgcgaagccggaaacccgcaccaag
ctcaccatgttccccacatccatcttcgccgacttttccgagtttggtcccctctgcgcc
ttgctaaaggtgtgctttcggtacgcggccgaacatggcctgctcccactaaactttgat
gatgcaagcaaggaagatgatttgctgcgcctaattttccatgctgaaaagactctcaag
aaagatcattttttccgcgtcatcaagattttcatatccccactcatcgagcaggaggag
tctgaatcgctgagagcaaccgctcagagacatggtgctgcggtcgtctccaactctcac
gtcgccacacatctcatctaccctgaccccgacggcacccgcgagaaccagacagacgga
caagcactcgtacgggtgcttgaacggacagacttccgaggtgaaacttttgcctttctc
cactggcttcatcacccggactcatacaacgactgggttccggcttccgaaattctcggt
catgtttacattccgagacgaagaaaagaaagagaacaatggcacgtgcaagcacgatgg
ctgcgtgatttggctctctacaatgactggatgaatgaactggactatgaaatgccccaa
gactttccggatcttgccggcctctccccaaaaacagtcgaactggatgcaaaagggcac
gaaccgcgcgcgcttgtgaaaatacgtctgcgaatgccaagggaagatgaaattggcaag
caagcgagcctccttggggcatcgaaaggagttgcgctgccgcctcatgcaaatggcttc
gcagatgccagtgacatgcgagatgcaaacggggatcacgccatgatagatgttggtgac
ttatctgatgaagatgccgacggctatcgtcatccaaatgaatccaatggttcgtcaagc
gctcccggcagtgggacaactacaggccagaccacgaaaatatctgtgggtgatggcgtc
ttcatcccttttttttctaagtggtttcggatacagtctgtgcacgatatagagcgaagg
gcattaccggaattcttcgagcagcgatatgcttcgaaaaacgaggatacctacaaagaa
acacgcaacttcatgatcagcacatggcgtcagggccgcaacgaatacctttcgagtaca
gctgtgagaaggcatctagccggggatgcatgcgcagtgttgcgtttacacggatttctt
gagcactggggtctcatcaactacgagtgctcagcgcaaggagctgcaccagcttctttc
atcccccctccacgcgctctccctctccgtgcagggcatgaaagagacgattctgtccga
gccaatgctcagattgttcttgacgacggcagcaggccggcaatagaaggcgggaaagtt
gtgaaatatggcagaaatgatgaagttgttggcaacagcacatcagaggccgtactaatt
cgtgacagtgacaggatgggtcaagctttgcctatcgcagagtcgccagcgcgagagccg
atcgagtatcattgtgattcatgcggagtagattgctcagtgttgagattccattgcgca
acgaaagcggatgttgatctctgtgcttcatgctatcagaatgcaaagtattcttcctcg
atgaagcctcgagatttcattcaaatgaactcggctggtgctcatggtggaccagatgaa
acagaaggagatgtttggacagaaagtgagacactacttctgctggaagcgttggagatg
tacggcgacaactggacccttgtgtcggagcacgttgggtcgaagggaaacagccaatgt
gtgattcagttccttcggcttcccattgaagactccttcctcaataccacggcgaggtcg
tggtggtctgttgcgcctccaggaaatggtgatgaaagttcgcctctcgacatgcttcga
gcagcaggtgcccgcgaggcggccttggccaaggtgaacaccacaaaatcttcagagata
tctctatctgggcaaccactagtatttggtgaccaaattagcaccatcatgccatttgcg
agtaagttggtatcgctttgtcccccagatactgtgaaggagttaactcgggtctttggg
gtggggagctcgagaaaacggcaaaggagctacctggatgtgtttttgaaggaaagttgt
agaagaacggacaaaaacaacgacagtggaaaggaggaatcacttgaggacctggtagga
tgtttcacgactaatcgtgtctacaagaagatgcgaaaaatgatccctactcctgcgagt
tttctccgaactgagaaaggggataaagtgggacgtgcaacattctcccttgtcagacac
ggagcaatccagagcaacgaagccattcgactgctactcgacccatcgccaagcgctcta
caccagatggaaaggcccgaccgcggaagtgcagctgagcatgtggagagagcagcacca
gctgtagaaaaagccagcaaaacaaaaccaaaatgcgatgatcacgacatttccgaaagt
gagaagccggattcggcatctgatgaagggatagaggagcccgcagccttggcaataaca
tcgctgagtgcggctgccgcttcagcgtcgtacatgcaagagcttgaagaagctgaaatc
gatcgtttgtactcatttttgtcagaaattcgggtgcaactcattgagcgacgcatagca
cacttggaatcaatcacagaatacgaaagctttgcagatggatacaaggaaaaaaaactg
aacgaagagatgtcaaggtctattctccggcgaaaagaatcattgttgtcttgtcaatat
tga
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integrated database retrieval system