KEGG   Chondrus crispus (carragheen): CHC_T00001865001
Entry
CHC_T00001865001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CHC_T00001865001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccp03021]
    CHC_T00001865001
   03036 Chromosome and associated proteins [BR:ccp03036]
    CHC_T00001865001
Transcription machinery [BR:ccp03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     CHC_T00001865001
Chromosome and associated proteins [BR:ccp03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    CHC_T00001865001
   PBAF complex
    CHC_T00001865001
   GBAF(ncBAF) complex
    CHC_T00001865001
SSDB
Motif
Pfam: SWIRM SWIRM-assoc_2 Myb_DNA-binding Myb_DNA-bind_6 ZZ SWIRM-assoc_1
Other DBs
NCBI-GeneID: 17320566
NCBI-ProteinID: XP_005712850
UniProt: R7Q3C6
LinkDB
AA seq 1020 aa
MGPLGASIRALRPRCGLLEPDIPPVAVRVSRYATISKALSRSAVDSRHCTEKKLSKLVLS
LRSFMDEHFGRTAKPETRTKLTMFPTSIFADFSEFGPLCALLKVCFRYAAEHGLLPLNFD
DASKEDDLLRLIFHAEKTLKKDHFFRVIKIFISPLIEQEESESLRATAQRHGAAVVSNSH
VATHLIYPDPDGTRENQTDGQALVRVLERTDFRGETFAFLHWLHHPDSYNDWVPASEILG
HVYIPRRRKEREQWHVQARWLRDLALYNDWMNELDYEMPQDFPDLAGLSPKTVELDAKGH
EPRALVKIRLRMPREDEIGKQASLLGASKGVALPPHANGFADASDMRDANGDHAMIDVGD
LSDEDADGYRHPNESNGSSSAPGSGTTTGQTTKISVGDGVFIPFFSKWFRIQSVHDIERR
ALPEFFEQRYASKNEDTYKETRNFMISTWRQGRNEYLSSTAVRRHLAGDACAVLRLHGFL
EHWGLINYECSAQGAAPASFIPPPRALPLRAGHERDDSVRANAQIVLDDGSRPAIEGGKV
VKYGRNDEVVGNSTSEAVLIRDSDRMGQALPIAESPAREPIEYHCDSCGVDCSVLRFHCA
TKADVDLCASCYQNAKYSSSMKPRDFIQMNSAGAHGGPDETEGDVWTESETLLLLEALEM
YGDNWTLVSEHVGSKGNSQCVIQFLRLPIEDSFLNTTARSWWSVAPPGNGDESSPLDMLR
AAGAREAALAKVNTTKSSEISLSGQPLVFGDQISTIMPFASKLVSLCPPDTVKELTRVFG
VGSSRKRQRSYLDVFLKESCRRTDKNNDSGKEESLEDLVGCFTTNRVYKKMRKMIPTPAS
FLRTEKGDKVGRATFSLVRHGAIQSNEAIRLLLDPSPSALHQMERPDRGSAAEHVERAAP
AVEKASKTKPKCDDHDISESEKPDSASDEGIEEPAALAITSLSAAAASASYMQELEEAEI
DRLYSFLSEIRVQLIERRIAHLESITEYESFADGYKEKKLNEEMSRSILRRKESLLSCQY
NT seq 3063 nt   +upstreamnt  +downstreamnt
atgggaccgctcggcgcctcaattcgcgccttgcgacctcgctgtggcctgcttgagcct
gacattcctcccgtcgcggtccgcgtctcccgctacgcaaccatctccaaggctctgagc
cgcagtgctgtcgattcccgccattgtacagagaaaaagctttccaaattggttctcagc
ctgcgcagctttatggacgagcattttggccgcaccgcgaagccggaaacccgcaccaag
ctcaccatgttccccacatccatcttcgccgacttttccgagtttggtcccctctgcgcc
ttgctaaaggtgtgctttcggtacgcggccgaacatggcctgctcccactaaactttgat
gatgcaagcaaggaagatgatttgctgcgcctaattttccatgctgaaaagactctcaag
aaagatcattttttccgcgtcatcaagattttcatatccccactcatcgagcaggaggag
tctgaatcgctgagagcaaccgctcagagacatggtgctgcggtcgtctccaactctcac
gtcgccacacatctcatctaccctgaccccgacggcacccgcgagaaccagacagacgga
caagcactcgtacgggtgcttgaacggacagacttccgaggtgaaacttttgcctttctc
cactggcttcatcacccggactcatacaacgactgggttccggcttccgaaattctcggt
catgtttacattccgagacgaagaaaagaaagagaacaatggcacgtgcaagcacgatgg
ctgcgtgatttggctctctacaatgactggatgaatgaactggactatgaaatgccccaa
gactttccggatcttgccggcctctccccaaaaacagtcgaactggatgcaaaagggcac
gaaccgcgcgcgcttgtgaaaatacgtctgcgaatgccaagggaagatgaaattggcaag
caagcgagcctccttggggcatcgaaaggagttgcgctgccgcctcatgcaaatggcttc
gcagatgccagtgacatgcgagatgcaaacggggatcacgccatgatagatgttggtgac
ttatctgatgaagatgccgacggctatcgtcatccaaatgaatccaatggttcgtcaagc
gctcccggcagtgggacaactacaggccagaccacgaaaatatctgtgggtgatggcgtc
ttcatcccttttttttctaagtggtttcggatacagtctgtgcacgatatagagcgaagg
gcattaccggaattcttcgagcagcgatatgcttcgaaaaacgaggatacctacaaagaa
acacgcaacttcatgatcagcacatggcgtcagggccgcaacgaatacctttcgagtaca
gctgtgagaaggcatctagccggggatgcatgcgcagtgttgcgtttacacggatttctt
gagcactggggtctcatcaactacgagtgctcagcgcaaggagctgcaccagcttctttc
atcccccctccacgcgctctccctctccgtgcagggcatgaaagagacgattctgtccga
gccaatgctcagattgttcttgacgacggcagcaggccggcaatagaaggcgggaaagtt
gtgaaatatggcagaaatgatgaagttgttggcaacagcacatcagaggccgtactaatt
cgtgacagtgacaggatgggtcaagctttgcctatcgcagagtcgccagcgcgagagccg
atcgagtatcattgtgattcatgcggagtagattgctcagtgttgagattccattgcgca
acgaaagcggatgttgatctctgtgcttcatgctatcagaatgcaaagtattcttcctcg
atgaagcctcgagatttcattcaaatgaactcggctggtgctcatggtggaccagatgaa
acagaaggagatgtttggacagaaagtgagacactacttctgctggaagcgttggagatg
tacggcgacaactggacccttgtgtcggagcacgttgggtcgaagggaaacagccaatgt
gtgattcagttccttcggcttcccattgaagactccttcctcaataccacggcgaggtcg
tggtggtctgttgcgcctccaggaaatggtgatgaaagttcgcctctcgacatgcttcga
gcagcaggtgcccgcgaggcggccttggccaaggtgaacaccacaaaatcttcagagata
tctctatctgggcaaccactagtatttggtgaccaaattagcaccatcatgccatttgcg
agtaagttggtatcgctttgtcccccagatactgtgaaggagttaactcgggtctttggg
gtggggagctcgagaaaacggcaaaggagctacctggatgtgtttttgaaggaaagttgt
agaagaacggacaaaaacaacgacagtggaaaggaggaatcacttgaggacctggtagga
tgtttcacgactaatcgtgtctacaagaagatgcgaaaaatgatccctactcctgcgagt
tttctccgaactgagaaaggggataaagtgggacgtgcaacattctcccttgtcagacac
ggagcaatccagagcaacgaagccattcgactgctactcgacccatcgccaagcgctcta
caccagatggaaaggcccgaccgcggaagtgcagctgagcatgtggagagagcagcacca
gctgtagaaaaagccagcaaaacaaaaccaaaatgcgatgatcacgacatttccgaaagt
gagaagccggattcggcatctgatgaagggatagaggagcccgcagccttggcaataaca
tcgctgagtgcggctgccgcttcagcgtcgtacatgcaagagcttgaagaagctgaaatc
gatcgtttgtactcatttttgtcagaaattcgggtgcaactcattgagcgacgcatagca
cacttggaatcaatcacagaatacgaaagctttgcagatggatacaaggaaaaaaaactg
aacgaagagatgtcaaggtctattctccggcgaaaagaatcattgttgtcttgtcaatat
tga

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