Chondrus crispus (carragheen): CHC_T00001951001
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Entry
CHC_T00001951001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
CHC_T00001951001
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccp02000
]
CHC_T00001951001
04147 Exosome [BR:
ccp04147
]
CHC_T00001951001
04090 CD molecules [BR:
ccp04090
]
CHC_T00001951001
Enzymes [BR:
ccp01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
CHC_T00001951001
Transporters [BR:
ccp02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
CHC_T00001951001
Exosome [BR:
ccp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
CHC_T00001951001
CD molecules [BR:
ccp04090
]
Proteins
CHC_T00001951001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
Zeta_toxin
AAA_22
RsgA_GTPase
AAA_16
AAA_15
AAA_29
HUTI_composite_bact
Motif
Other DBs
NCBI-GeneID:
17320880
NCBI-ProteinID:
XP_005713167
UniProt:
R7Q5S3
LinkDB
All DBs
AA seq
1290 aa
AA seq
DB search
MQNVNCHDGGGWECDWLRQNRHACIERPLRGIAIKTTPGCTYSAVVDDQCKTWCPGDWPL
SRAGLAHACPLVPNRKLSFLTALRTPFTMEPGDSDLKPSSAPPKWKFWARKEKVPEEERK
YPPVPYIRLFRYASNADKLMLGLALLAAIGHGTLLPILTVIFGDVVDQFGPFLTAGAIES
DIDISDSIASKVNLFLYLAIVAFALSFLQLSLSVIAANRIGNDLRKKFFDNLTRQDCNFY
DDSEAGSLTHIVISDVNLIQGGIGDKLCTAVQYFTTFVTGVIVGFAYGWKLTLLILGVTP
ILLVAGAVFGNASADATGDGLGAYGEAGGVAQEVFSLIRTVTAFGGQEDELRRYEKSLDK
AYIASVKAAIASGFGLGTAMFCILSTYGLAFFVGANLARVSDPEIEPEMSPGDIDPQNDD
GLIPTEPTTGHVTFENLDFNYPKRITEEGVSALVLDNFNLDIAAGTSEAFVGKSGCGKST
LARMIQRFYDPIAGSVRLDGVDIRELNVRWLRSQIGVVAQMPSLFMLSIRDNIALVTNDD
IIEAAKLANAHNFIIKLPEGYDTMLGERGAMLSGGQKQRVCIARALIRNPKLLILDESTA
ALDTASERLVQDALDKAAAGRTTVTIAHRLSTIRNADNISCVDGGKVVERGPHDELVRRE
GGFYRAVHDLQNVQRDKMQKEKEAETEDDSDSKLAPVLAAQKSMSKTAHSTSVRDALAVE
EEKALAAVDKGVFWRTVKMNKGEFSYMFIGILGAVAVGVVWPIAAISLTELVEIMLTEND
PSDVRVWALSFKLTRRIRSDAFRALLRQEMGYFDMEENSVGALAGRLSSDAGAIKGLTGD
LFGVGVNVLGALVAGLTIAFVNCWELTLVVLAIIPGIALGGYFEMQASAGIDSGARKDFA
QANVVAAEAVDNIATVRTLGLEDYFASRYSKMIHKTRRDKLRKAVVTAIAFGFSEFCQYL
LWYATFKAGGNFVRDGRCSFKEMLLSSMAILFAAITFGNVSVFAPDVGASQIGATHIYRL
LDRESEIDPTSKDGEDVDHVAGDVSSKKVYFEYPRRPDVPVLRGLSIDVSRGKTLALVGT
SGHGKSTIISLLERFYSYREGTIHIDEHEISKARVATLRNHIGLVSQEPELFNRSVFENI
AYGAPHEDGTPITMTDVIEAAKKANAHEFVSALPQGYDTVVGPRGDALSGGQRQRVAIAR
SLIRAPPVLLLDEATSALDSASERLVQAALDKASDGRTTIVVAHRLSTIKDADVIAVVRK
GRIVESGTHGELLRKNGHYADLVQHQLSDV
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatgtgaattgccatgatggcggaggatgggaatgtgattggctgaggcaaaat
cgccacgcatgcattgaacgaccgctgcgggggattgccatcaaaacgacgcctgggtgc
acgtacagtgcagtagttgacgatcaatgcaaaacgtggtgtccgggagattggccactc
agtagagccgggctggcgcatgcttgtcccctcgtaccaaaccggaaactatcttttctc
actgcactccgcacgccattcaccatggaaccaggggactcggatctcaagccctcatcc
gcccctccgaaatggaagttctgggcacgcaaggagaaggtgcccgaggaagagaggaag
taccctcccgttccttacatcaggctcttccggtacgcctccaacgcagataaactcatg
ttggggttggcgctcctagcagcaattggtcacggcaccctgctccccatcctcactgtc
atcttcggcgatgtcgtcgaccagttcggcccgttcttgacggcaggcgccatcgaatcg
gacatcgatatttcggacagcattgcatcaaaggttaatctcttcctgtaccttgcaatc
gtcgctttcgccttgtcttttctccagttgagtctctcagttatagccgcgaatcgcatc
ggtaatgaccttaggaagaagtttttcgacaaccttaccagacaggattgcaacttttat
gatgatagcgaagctgggtctctcacacacatcgtcatctcagacgtcaatctcattcaa
ggcggcataggggacaagctctgtaccgccgtccagtatttcaccacgttcgtcacaggc
gtcattgttggctttgcatacggctggaagcttacgcttctgatccttggtgtcactccc
attcttcttgtcgccggtgctgtctttggaaacgcctcagccgacgccactggtgacggt
cttggtgcatacggagaggctggtggtgtcgctcaggaagtcttttcgctcatacgtaca
gtcaccgcttttggtggtcaggaggatgagctccgtaggtatgaaaagagcctcgacaag
gcttacatcgccagcgttaaagccgcaattgcctcgggctttggcttgggaactgccatg
ttttgcatcttaagcacgtatggtctcgccttctttgtgggtgcaaacctggctcgtgtt
tctgatcccgagatagaacccgagatgtctccaggtgatatcgaccctcaaaatgacgac
ggactcatccctaccgagccaaccaccgggcacgttacttttgagaacctcgacttcaac
tatccgaagagaatcactgaggaaggggtctccgccctcgtacttgacaacttcaattta
gatatcgcggcaggcacttctgaggctttcgtgggcaaatctggatgtggaaagagtact
ctcgccaggatgattcagcgtttttatgatcctatcgcagggtctgttcgtctagatggt
gtagacatccgggagttgaatgtccgctggttgcgctcccagatcggtgttgtggctcag
atgccatctctgttcatgctttccatccgggataatattgcactcgttacaaacgacgat
atcattgaagcagcaaagctcgcaaacgctcacaacttcattataaagctaccagagggc
tatgacacaatgcttggggagcgcggtgcgatgctgagtggcggtcagaaacagcgagtc
tgtatcgctcgtgccctgattcgcaatccaaagcttctcattcttgatgagtcaaccgcc
gcacttgacacagctagcgaaaggctggtccaagacgccctcgacaaggctgctgccggc
aggaccactgtcaccattgctcatcggctcagtacgatccgtaacgctgacaacatttct
tgtgtggatggaggaaaggtggttgagagaggacctcatgatgagctggtgaggcgcgag
ggaggcttttaccgtgccgttcatgatctgcagaatgtccaacgggataaaatgcagaaa
gagaaggaagcggagacagaggatgacagcgattcaaaattagctcctgtactggcggcg
cagaagtctatgagtaaaacggctcattctacatctgtacgagacgcccttgcggtagaa
gaagaaaaggctcttgcagctgtggataagggggttttctggagaaccgtgaagatgaac
aagggtgagttctcctacatgttcatcggaatcttgggtgccgttgcagttggtgtggtg
tggccaattgcggcgatctcgctgacggaactcgttgagatcatgctcacggaaaacgat
ccatctgatgtacgggtttgggccctatctttcaagctgacgaggcgcattcgttctgat
gctttccgtgcactcctgagacaggagatgggctacttcgacatggaggaaaactctgtt
ggtgcactggcagggcgcctttcttcggatgccggtgctatcaagggtctaacgggtgac
ctctttggcgttggtgtcaatgtgcttggtgcgctggtagcgggacttacgattgcattt
gtgaactgctgggaacttacccttgttgtccttgccatcattcctggaattgcattgggt
ggttactttgagatgcaggcctctgctggcattgactctggagcccgtaaggacttcgca
caggcgaacgtggttgcagctgaagctgtcgacaacattgctacggttagaactcttgga
ctggaggattacttcgcctctcgatatagcaagatgattcacaaaaccaggcgcgataag
ctgcgcaaagctgtcgttactgctatcgctttcggtttctctgagttctgccagtacttg
ctttggtatgcaacattcaaggcaggtggcaacttcgtgcgcgatgggagatgctcgttt
aaggaaatgcttttgtcttcaatggctattctgtttgctgctatcacgttcggcaacgtt
tccgtgttcgctcctgatgttggcgcttcccaaatcggggccacgcacatttaccgactt
ctggaccgagagagcgagatcgaccccaccagcaaggatggagaagacgttgatcacgtt
gccggtgatgtgtcctccaagaaagtttattttgaataccctcgccgtccagatgtgcct
gtcttgcgtggtctctctatcgacgtttcaagaggtaagaccctagctctcgtcggaaca
agtggacatggaaagagtactattatctccttgctggaacggttttactcttatcgggaa
ggaactattcacatcgatgaacatgaaatctcgaaagcacgtgtggcaactcttcgaaac
cacattggtttggtttcccaagaacctgaactcttcaaccggtctgtgtttgaaaacata
gcgtatggtgctccccacgaagacggcacaccgatcacaatgacagatgttatcgaggct
gccaagaaggccaatgcccatgagtttgtgtctgctcttccgcaaggatatgacacagta
gtaggacctcgcggcgatgcattgagtggaggacaacgacaacgtgtcgcaattgcgagg
agtttgattagagctcctccggttctgctgcttgacgaagctactagcgctttggacagc
gcaagtgagcgcttagttcaggcagccttggacaaggcttccgacggtaggacaacaatt
gttgtcgcacatagattatcgacgatcaaggatgctgatgtaatcgccgtcgtgcggaaa
ggtcgcattgtagagtcagggacacatggtgagctacttagaaagaacggccactacgcc
gatctggttcagcaccagctctcggatgtttag
DBGET
integrated database retrieval system