Chondrus crispus (carragheen): CHC_T00002414001
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Entry
CHC_T00002414001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K14306
nuclear pore complex protein Nup62
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CHC_T00002414001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccp03019
]
CHC_T00002414001
Messenger RNA biogenesis [BR:
ccp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CHC_T00002414001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nsp1_C
PIF1
Nucleoporin_FG
Bul1_C
BORCS7
Motif
Other DBs
NCBI-GeneID:
17321336
NCBI-ProteinID:
XP_005713624
UniProt:
R7Q8J9
LinkDB
All DBs
AA seq
705 aa
AA seq
DB search
MSFSGAGTSSAGFGQSSSSLFGAPTDSAVPAGSVPSFGGPTFASSGPSLFGVASFGGASS
QSLFGAPATGGTNLFGVAGTGFGAAQSKPPVASTPATGFGATQSATASTFGSAQPTAATT
GFAAPQSATASSTAGLFGPPSAGSASLFGTPSSQSSLFGAPLAAPASQPGASLGLGMPSA
TTAAASLNASKPAAAVAGASLFGVASQPAASSGYNFNLSTAPASGTGQVSSFATPTTAAS
LVGSLLGASIASAKSAPAPAFSNSTLAQSQGKKPTAAAFSLSFPSANSASMAAGANAGAA
VVPGGFKAAAAVAASSSGSVQSVSFGLAAPSTASAASGPGLSGVPASTGVASAGEKRAST
SAEGVDAPGGTSSKAPTGFLSGAPASAASASGSASAPSFGLGSTSGASFGASSAGNATGS
GALSAIGKGAAKDATGAGTSQTSGGALATASFGVTGASSAAVVATASAGVLASTASSGAA
TSTSAAAIPSDIKDLSLDEVVNKWTEEVTDLATQFQKGARMVSKWDRAIVSNEDKINSLN
RDAQSVQIAHKELNDNLDLILSQQNELHSLLDTLQIDVERKIGSSPSKPGSPHGGHSDTK
LRGDIERESMHRMSIEVMEELDTMALTIRDLVVDLNKGSEMTGRGRAGDTVSQIISVLNA
HLDSLQYLDETSGSLHKRLTDVQRACEVATRETERMYGRRTAGMY
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcattctcaggcgcaggtacgagctcggctggcttcggccagtcgagttcatctctc
ttcggcgcgcccacagactccgccgttccggccggttcggtaccctctttcggaggcccg
accttcgcctcctcgggtccatcgttgttcggagtggcctcgttcggcggcgcctcatca
cagagcctgttcggcgccccagccacgggcggcacgaatctcttcggcgtagcaggaacc
ggtttcggagctgcccaatcgaaaccgcccgtggcctccacccccgcgacgggctttggt
gcgacgcagtctgcgacagcatcgactttcggtagtgcccaaccgaccgctgctacgacc
ggatttgcggcgccgcaatcggctacggcatcctctactgctggtctcttcggtcccccg
tcagccgggagcgcaagtctcttcggaacgcctagttctcagtcctcactcttcggcgct
cctctcgcggctccggcgtcccagccgggcgcatcactcggacttggaatgccctcagct
acaacagcagcagccagcctcaatgcgtcgaagccggccgcagccgttgcgggtgcgtcg
ctcttcggtgttgcttctcaaccggcggcatcatccgggtacaactttaatctttctact
gccccagcaagcggcacaggtcaagtatcatcgttcgccactcccaccacagctgcatcg
ttagttggctctctccttggcgcaagtattgcctcggcaaagtctgctccagccccggca
ttctcaaactcgaccctcgcgcagtcgcaaggtaagaaaccgacagcagcagcattctca
ttgtcttttccttcagcaaacagcgcttcgatggcggctggggcaaacgcaggggcagcg
gtggtaccaggtggcttcaaggcggccgccgccgttgctgcatcatctagcgggtccgta
caatctgtgtcatttggtctcgcggcaccctctacggcgagcgcagcatctggaccaggg
ctgtctggagttccagcttccaccggagtcgcatccgcaggggaaaagagagcaagcact
agtgcagaaggggttgacgcgccaggtggaacttcaagcaaggctccaaccgggttcttg
tcaggggcccctgcctctgcggcaagcgcgtcaggctcagccagtgctcctagtttcggg
ctaggtagcaccagcggcgcctcttttggagcttcatcagcaggaaacgcaactgggtct
ggggcactgtcagcgattggaaagggcgccgctaaagacgcaaccggggcagggacgtcg
caaacttcagggggagcattggcaaccgctagctttggtgtgacaggagctagttctgct
gcagttgtggcgacggcttccgcgggagttttggcatcgacggcatcatccggagctgca
acatccacttccgccgcagcgattccttcagacataaaagatcttagcttggacgaagtt
gtgaacaagtggaccgaggaagtcacagatcttgcgacccagtttcagaaaggcgcacga
atggtttcaaaatgggatcgtgcgattgtttcgaatgaagacaaaatcaactcgctaaat
cgcgacgcccaatcggtccaaatcgcacacaaggaactcaacgataatttggacctcatc
ttatctcaacagaacgaactacattctctactggatacgcttcaaatcgatgtagaaaga
aaaattggctcatctccgtcaaaaccaggttcgcctcacggcggacatagtgacacaaaa
ctgagaggcgatatcgagcgtgaatccatgcatcggatgtcgatcgaagtgatggaagaa
ttagatactatggctcttacgataagggacctggtggttgacctgaacaagggaagtgaa
atgactggaaggggcagagctggtgatacggtatcccaaattatttcagtgttgaatgcg
cacttagattcattgcagtatctagatgagacttccggcagtctgcacaagagactgaca
gatgtacaaagagcttgcgaagttgccacacgggaaacggagcgtatgtacgggagaaga
actgctggcatgtactaa
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