KEGG   Chondrus crispus (carragheen): CHC_T00002489001
Entry
CHC_T00002489001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K17985  activating molecule in BECN1-regulated autophagy protein 1
Organism
ccp  Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccp04131]
    CHC_T00002489001
   03029 Mitochondrial biogenesis [BR:ccp03029]
    CHC_T00002489001
Membrane trafficking [BR:ccp04131]
 Autophagy
  Mitophagy
   PINK1-Parkin associated proteins
    CHC_T00002489001
Mitochondrial biogenesis [BR:ccp03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-dependent mechanism factors
    CHC_T00002489001
SSDB
Motif
Pfam: WD40 EIF3I WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 17321257
NCBI-ProteinID: XP_005713517
UniProt: R7Q795
LinkDB
AA seq 521 aa
MNIVRRRPRATAGFSFVRDRETGGEPPTSPDLLSWVEDNTLRRLDRGKYVPLDRPDPLVR
STISIAFSHDGRYFASTHGDHSVKVFRYPSGEQIACLDGHPRTPWTVRFHPKDSSILASG
CLGCECRVWDVSQGECIRKHTFASSISCVSFNPDGSLLAITSGSNLLLWNYMEAAPNNSR
STSSAIDDIRGPGVPRKLLGGVNPFHMVDFHPSGTMLMTGEKNRSPPPPTGAPSNQEEQF
TLKLVIHRFDRRIVKKFDDPVLEVPRAVAYNDAGIHFSPCGTMLAACIPVHEHSDSFKIA
VMSLVKRNQIKIGTVMYETALDRGHVTALTNLKFSSTSHHLLAGFSFRPKNPVLRGHAEH
YDQTAGRGADGGMRRPNQVGVVDIYNVSEKFEMIRSLRADMDLTEGQEGGAEDEINVAVF
APVFGIADGVVYGTQKGRIRMFQQATGADMKAEPCGESHADSCSSSAWTGSTATTWSSHR
APYVVPPISRRQRLRNTLVREQAPSGDYRDTTPGSNPVQLR
NT seq 1566 nt   +upstreamnt  +downstreamnt
atgaacatcgtccgccgtcgcccacgcgccaccgcgggcttttcgtttgtccgcgatcgc
gagacgggcggtgaaccccccacatctccggacctgctctcttgggttgaggacaacacc
ttacgccgcctggaccgcggaaaatacgtccccctcgaccgcccggatcctttggtgcgc
tccaccatcagcatcgctttttcccacgacggcaggtattttgcttctactcatggcgat
cattccgtcaaggtcttccgctacccctcaggagagcaaatcgcatgcctcgatggccac
ccgcgcaccccgtggaccgttcgtttccatccaaaagattcctccatcctagcctcgggc
tgcttgggttgcgagtgtcgcgtctgggacgtttctcaaggcgaatgcatcaggaagcac
acttttgcttccagcatttcttgtgtcagtttcaatccagacggcagcttgctcgctatt
acgtcaggtagcaacttgctgctttggaactatatggaggccgcgccgaacaactctcgc
tccacgagctccgctatcgacgacatccgcggcccgggggttcctcgaaaattgcttggc
ggtgtgaacccttttcacatggtcgactttcatccgtcaggcaccatgctcatgacggga
gagaagaataggtctcccccgccaccgacgggcgccccgtctaatcaagaggagcagttc
actctcaagctcgttatccaccgctttgatcgtcgcattgtgaagaaatttgatgatcct
gtgctagaggttcctcgtgcggtggcgtacaatgatgcaggcatccatttttctccctgc
ggtaccatgctggcggcttgcatacccgtgcacgagcatagcgattcctttaagattgcg
gtcatgtcacttgtcaagcgcaatcagatcaagatcggcacggtcatgtacgagacggct
ctggatagagggcatgtcactgctttgaccaatctcaagttctcatccacgtcacatcac
ttgctggccggcttttcgtttcggccgaagaatccagtccttcgtgggcacgcagaacac
tatgatcagacagctggacggggtgccgatggtggcatgcgccgtcctaatcaagtaggc
gtagtagatatatacaatgtgagtgagaagtttgaaatgatccgaagcttgcgcgcagac
atggatctcacagaaggtcaagaagggggggctgaggatgagattaacgtggcagtattt
gcgcctgtgtttggcattgcggacggagttgtgtacggtactcaaaagggacgtatccgc
atgtttcagcaggctactggtgctgacatgaaggcagagccttgtggcgaatcgcatgca
gacagttgcagctcatcggcatggacaggctcaacagcaacaacctggtcatctcatagg
gcaccgtacgttgttccgccgatcagtcgaaggcaacgcttgagaaacacactggttcga
gaacaagctccttctggcgattatagggacaccacaccaggaagtaatccagttcagctc
cgttaa

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