Chondrus crispus (carragheen): CHC_T00002851001
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Entry
CHC_T00002851001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K10610
DNA damage-binding protein 1
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03420
Nucleotide excision repair
ccp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CHC_T00002851001
09124 Replication and repair
03420 Nucleotide excision repair
CHC_T00002851001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccp04121
]
CHC_T00002851001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00002851001
Ubiquitin system [BR:
ccp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
CHC_T00002851001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
CHC_T00002851001
TCR (transcription coupled repair) factors
Cul4-CSA complex
CHC_T00002851001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
WDR55
Motif
Other DBs
NCBI-GeneID:
17321723
NCBI-ProteinID:
XP_005714008
UniProt:
R7Q826
LinkDB
All DBs
AA seq
1145 aa
AA seq
DB search
MYNYLVTAHKHSGVSHTAVGNFLSPDHRNLLVAKVHYIQVYNITPEGLVCAVELPIFGTI
SVMKLIRMPHDTQHHLVILTEKEKLCILRWNLEENRCHVVSTGNMHDEYAVTEAQEKIGI
VDPNGRCIALCLRQNLLKIIPTSGDADRTAFNVRMRESSVMDMVFLHGRPHPTIAVIFGR
DKVNAIRTYEISIHDQDIRLCEPEKTNLDLSYVKMVAVPQPYGGVLVFGDDAIIYLSPEG
DEVKQPIDATIINAVGQIDDEGTRYLVGDHKGQLMMLMLVEGPSRAAVLQLKVDVLGETS
AARSISYLDSGFVYIGSRSGDSQLIRLGRPGNSEMGSLVDVVQSYTHLGPVVDFCIVKGM
GYLRQGQGQVVTCSGLAKDGSLRIIRNGIGISEQASVELPGIKDMYSLRRHFGDRYHSYL
LQSFTSATRVLELIGAHEMAPASLPGFDESSPTLHAANMLGDILVQVTANGVHVTDCQTM
TPQPALAWLPPTDVRVSIASGNATQLLLATTGGNLIYLAVDVEKKTVVEVSHVKMENEIA
CVNCNYLKVSSKMTDVAEKKEDQQMAFVGAVGLWAEVNECPVVKLVALPSLATIHTVELG
GDVIARCVLLCSMEGRHYLLVALGDGCLLTYSVNAETAAAAAASGDPDVQSTMNTPSVVS
ERRKLSVGTQPADLSIFKSRGSDHVFAACDRPTVVYAATGGGKLLISNVNLQEVTRVCGF
DTAAFPDCLAIATEDCLHLGAVDEIQKLHISTVPLHEQPRRIAHMESARVFAVLTESTHI
DENGDETLEQFVRTIDDTRYDTIDKYRLKPMEIGSAILATTFKNDNINPDEQFLVVGTGF
EKPEQEDADEGRILIFRLLDGKPVLVSELQTKGPTHCFCSFDGMFLAGTGPEVRLFSVSA
GKDGVITTKIEDKHHGHILGLQLARRGDFILVGDLIKSIMVLTCKKVGETYQLEEVARDY
GATMVMALEMLDDDVYVVAEHGKHLLTYQRNSYAATDAERGRLERIGQFHLGSRVNSIQH
GSLVMQMTDNEGPATKTLIFGTPDGTLGVIACIKPAIYEFFLALQNAMATLIPGVGGLSH
ADWRAMTQETPPSTAPAKNFVDGDLIERFLDLSMAQMSKVSSMVSVPVDELVQKVEEMQR
LHGAG
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtacaattacctcgtcacggcccacaagcattcgggcgtctcccacacagccgtcggc
aactttctcagccccgaccaccgaaacctcctcgtcgccaaggtccattacatccaggtc
tacaacatcacccccgagggattagtatgcgccgtcgagctgcccatctttggtactatc
tccgtcatgaagctgatacgcatgccgcacgacacccagcatcatctcgtcatcctcacc
gaaaaggaaaagctctgcatcttgcgctggaacctcgaagagaatcgctgccatgtcgtc
tccacgggaaacatgcacgatgagtatgccgtaacggaagcccaggagaagatcggtatc
gtcgaccccaatggccgctgcatcgccctgtgtctgcgccaaaatctactcaaaatcatt
cccacctctggcgacgcagatcgcaccgcgtttaatgttcgcatgcgcgagtcctcggtc
atggacatggttttcttacacggccgcccccatcccaccattgctgtcattttcggccgg
gataaggtcaacgcgatcagaacctacgagattagtatacatgaccaggacattcgcctg
tgcgaaccggaaaagactaatttggacttgtcctacgtgaagatggttgccgtcccccag
ccgtacggtggtgtgcttgtgtttggcgatgacgccattatttatctgtcccccgaaggc
gatgaagtcaaacagcctattgatgctacaataattaacgccgtcggccagattgatgac
gaggggacccggtatctggtcggcgatcacaaggggcagctcatgatgcttatgcttgtc
gaaggcccctcgcgtgcggccgttcttcagcttaaagtcgacgtactcggggagaccagc
gccgcccgctctatttcttaccttgatagtggatttgtatatattggctctaggagtggc
gattcacagctaatcaggctgggtaggcctggcaattcagagatgggatctctggtcgat
gttgtccagtcgtacacccacctcggacctgttgtcgatttctgcattgttaagggcatg
gggtatttgcgtcaggggcaaggccaagtcgtcacatgctccggcttggctaaggatggc
tcgctgaggattatccgcaacggaattggcatttcggagcaagcctctgtcgagctccct
ggaatcaaggacatgtactcgcttcggcggcattttggtgatcgctaccattcatacctg
cttcagagcttcacctctgcaacaagggttttggagttgattggagcacatgaaatggct
ccggcatcgctcccgggttttgacgaatcgagtccgacgttgcacgctgcaaatatgttg
ggtgatattctcgtgcaggttacggcgaatggcgttcacgtcacggactgtcaaactatg
actccacagcctgcactggcctggcttcccccgactgatgtgcgcgtatcgatagcgtct
gggaacgcaacgcagttgctgcttgcgacgactggggggaatctcatttacctcgcggtc
gatgtagagaagaaaaccgttgtcgaggtgtcccacgtgaagatggaaaacgaaattgca
tgcgtcaattgcaactatctcaaagtatcatcaaaaatgacagacgtcgcggagaagaaa
gaagatcaacaaatggcctttgtcggagcagttgggttatgggcagaagtgaacgaatgc
cctgttgtcaagcttgttgctcttccatcgctggcgacgatccataccgtcgaactcggt
ggagatgtcattgcgcgctgtgtcttactgtgttccatggaaggtcgtcactacttgctc
gttgccttgggcgatggctgcttactcacatactctgtaaatgcagagacagccgccgcc
gcagcggcgtcaggggatccggacgttcaaagcacaatgaacactccttcggttgtgtct
gaaaggagaaaattgagcgtcggtacacaacccgccgaccttagcattttcaagagccga
ggttcggatcatgtcttcgccgcttgcgaccgcccgacagtggtgtacgcagctacgggt
ggtggcaagttgttgatttcaaacgttaacctgcaagaagtgacgcgtgtttgcggattt
gacacagcagcgtttccggattgtctagcaatcgcaaccgaagactgtttgcaccttggg
gcagtcgatgagattcaaaaactacacatttcaactgtaccccttcatgagcaaccacga
cggatcgctcacatggaaagcgcaagagtttttgcggtgctgactgaatcgactcacatt
gatgaaaacggagatgaaactttagaacagtttgtccggactattgatgacacaagatac
gacaccattgacaagtacaggctgaaaccgatggaaattggttctgcaattctcgctact
acatttaagaatgataacattaaccctgacgagcagtttttggtggtcggcaccgggttt
gaaaagccagaacaagaagatgcagacgaaggccgaattctgatattccgactacttgac
ggtaaaccggtcctcgtgtctgaactacaaaccaaaggtccgacgcactgtttttgttca
tttgacggaatgtttttggcaggtactggacctgaagtgcggttgttttcggtctcagcc
ggaaaggatggggtcataacaacaaaaattgaagacaagcatcacgggcacattctagga
ctccaattagcaagaaggggagacttcattctggttggagatttaatcaagtcgatcatg
gtattgacatgcaagaaagtgggcgagacgtaccaacttgaagaagttgcacgagactat
ggtgcaacaatggtaatggcattggaaatgcttgatgatgacgtctacgtagttgcggaa
cacggaaagcacctgctcacgtatcaacgcaactcgtatgcagctactgacgcggagcgt
ggtcgtctggaaaggataggccagtttcatttgggcagcagggtaaatagcattcagcac
ggctcactggtgatgcagatgactgacaatgaaggaccagcaacgaagacgctaatattt
ggaacacccgatggaacgcttggtgtcattgcctgcattaagcccgctatatatgagttc
ttccttgcactacaaaacgcaatggccacactgatccctggagttggcggcttaagccat
gccgattggagagcaatgacacaggaaacacctcctagcacggcccctgccaagaatttt
gtagatggcgatctaatagagaggtttctagatttgagtatggctcaaatgtccaaggtg
agctccatggtgagcgtccctgtggacgaactagttcagaaagtagaagaaatgcagcgg
ctacatggtgcaggataa
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integrated database retrieval system
