Chondrus crispus (carragheen): CHC_T00003129001 Help Entry CHC_T00003129001  CDS       T02916                                  Name (RefSeq) hypothetical protein   KO K20179   vacuolar protein sorting-associated protein 11 Organism ccp  Chondrus crispus (carragheen) Pathway ccp04148   Efferocytosis Brite KEGG Orthology (KO) [BR:ccp00001]  09140 Cellular Processes   09141 Transport and catabolism    04148 Efferocytosis     CHC_T00003129001  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ccp04131]     CHC_T00003129001 Membrane trafficking [BR:ccp04131]  Endosome - Lysosome transport   Tethering complex    CORVET complex     CHC_T00003129001    Hops complex     CHC_T00003129001 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  PEP5_VPS11_N VPS11_N TPR_PEP5_VPS11 VPS11_C TPR_GEMI5 zf-RING_Vps41 zf-C3H2C3 DUF6223 zf_RING_Vps8_fungal zf-C3HC4_2 Motif Other DBs NCBI-GeneID:  17321965 NCBI-ProteinID:  XP_005714248 UniProt:  R7Q8R6 LinkDB All DBs AA seq 1167 aa AA seqDB search MSALLLTELSGIETCATSLTDSFILFSFYTPTPSAPGFFASPASRFAMSLRWKPFRFLSV ETLLDTTAGREDASSFGEVSLFPTLSAERNHERASQQRVLRRFATAAERAVSYDSIDGTF VLALPRGVVQLFHLASLDPSLTLGSYRSLHETTPPLHYTFSAHDGAVFSLVLVRHGDGVL PSLVTLGVDDGNPCLKVWKFRVRETSRSPIPPSSAIEDGPSPYQNGNRPVPADENRLECI AVYRLQSDSRPKVLAVKDAKLGIADISEIAIGFEDASVTILYGEIYRERAMRVRVAPAPG EMIQAKPIVFLRYCGTLLYCVSKVSVVVIVSVVDPEKDASKPVAFRREILDNMGSSTGKL CTVLDYSAELVVARAEGLYFFNRDGLGPCIAFPTEGQKAMVSSMGNYLIHSTEPGSITAY DVVNKLVAYRGKGVLTGCFQGHSSYTRNAMLCSADGSILKLSEISLQQRVNMLLKRGLHV PAIALARAESGENANKSNVMLTSALRQYAEYLMGKNRYDEAAEHLVQTIGGGVEPSWVVT RLVEQSGLRSGLRLYLEALHAAGRAAFAHTKVLITCYRHDRARGAILGSNATEKTNDEYV INVFSDVDWTEEQVDAAIVLCRDAGLFKVAERVSRRRGRHVQLAHTLVEDLGETEKALAL LRSLEDVEALQVIKACGRRLLEKEPVKFVHYLCDAICRSTASMPPGSSKPLLQLSMFLPI FIDMPAWRAVLLERVLGTPGGITKANAPKAWILLFESLVCVDVADRLQAKRKLTTQQKSR TEHGHPSLGGDEDSVKAEEQITTLESSVDTGERGTIGRRALKILQSRRSVIKLRAALEIA EQNGHDPCLEYLYEHLRMYTELGVSLRMSKNGPSLLRACRRHGDREPRLWMELIRLYAPL AAKEGYGSEGDAIGEDLELVSSSPPRRVSPIAGVEYVGEDGGMGKILGTISDGSSERGSA QDLVDEAMVALDRSGLLSQVEIVELVESACPDAPWSVVREYFERCAAGLKREAAVSEHAG LQLDGEIRELRREAKRLGEETVVIKPTTCASCEDVVSVPAVHFFCEHSFHVSCLAPGAVG VGNGVGGASAAMLVGREGVGAGLSNEGKTGMWGEECPQCAPELDAMVSMRQALQDKNRKH EEFFAMLKNSRDGFATIVEFLGRSPFL NT seq 3504 nt NT seq  +upstreamnt  +downstreamnt atgtcagctcttcttctcacagagctctctgggattgaaacgtgtgccacatctttaaca gactctttcattctctttagtttctacaccccaaccccttcagcgcctggcttcttcgca tcgcccgcctcgcgcttcgcgatgtcccttcgatggaagccatttcgcttcctatccgtc gagacacttctcgacaccactgcgggacgtgaggacgccagttccttcggcgaagtatct ctctttcccacgctctccgcagaacgcaaccacgaacgcgcctcacagcaacgcgtactc cgccgcttcgcaaccgctgctgaacgagctgtatcctacgactccatcgatgggactttc gtacttgcgctccctcgcggcgtcgtacagctcttccatctcgcatccctcgacccttca ctcacacttggctcgtatcgttccctgcacgagaccacacctcccctacactacacgttt tcggcgcatgatggagcagttttttctcttgtccttgtgagacatggcgacggagtgctg ccgagtctcgtcacgcttggtgtcgatgatggaaacccttgcttaaaagtatggaagttt cgtgtcagggaaacttcgaggtcaccaatacctccatcttccgctattgaagacggccct tccccttatcaaaatggaaatcgcccagtgcccgcggatgaaaatcgcttggaatgtata gccgtatatcgattgcaaagcgattcgcgcccaaaagtccttgccgtcaaggatgcaaag ctcggcattgctgatatttcagaaatcgctatcgggtttgaggatgcctcggttaccatt ctctacggcgagatttaccgcgaacgcgcaatgcgtgtacgggttgcgcccgcgccgggc gaaatgattcaagcaaagcctattgtttttttgcgctactgcggaacccttttgtattgc gtctctaaagtgtctgttgtcgtcattgtatcggtggtagacccggagaaagatgcctcg aagcctgttgcctttcgacgagagatcttggataatatgggctcgtcaaccgggaaactt tgtacagttctggactactctgccgaactagttgttgctcgggcagaaggattgtacttc tttaatcgtgacggattgggtccctgcattgcatttccgactgagggccagaaagcgatg gtatctagcatgggaaactatctcattcattcaactgagccgggttctattactgcgtac gatgttgttaacaaacttgtcgcttatcgtggaaaaggggtactaactggctgttttcaa gggcattcatcatatacgcgcaatgcgatgctttgctctgctgatggttctatattgaag ctctcggaaatctcattgcaacaacgtgtcaatatgctactgaagagggggctccacgtc cctgctatcgccctcgctagggcagaaagcggtgaaaatgcaaataagtcgaatgtcatg ttaacgtcagcactccgacagtatgcggagtacctcatgggtaagaaccggtacgacgaa gctgcggagcacctcgttcagactattggcggtggtgtggaaccaagctgggtcgtgacc cgtcttgtcgagcaatctgggttacgctccggactccggttatacctagaagcgttgcat gcagctggtagggcagccttcgcacacaccaaggttttaatcacttgctaccgtcatgac agggcaagaggggctattctcggttccaatgctacagagaagacgaatgatgaatacgtc attaacgtttttagtgatgtggattggactgaagaacaggttgatgccgcgattgttttg tgtcgagatgcaggattgttcaaagttgctgaacgagtctcaaggcggcgtggaagacat gtacaactcgcccacactctcgtggaggatctcggggaaacagagaaagcattggcgctg ttgcgatccttagaagatgtcgaagcgctgcaagtcatcaaggcttgcggtcgtcggcta ctagagaaagaacccgtcaaatttgtgcattatctatgcgatgcgatatgccgctccacg gcttctatgccacccggtagttccaaaccactgctgcagctgagcatgtttttgccgatc ttcattgatatgccagcgtggcgggcagtactactggaacgggtattaggcactcccggc ggtattaccaaagcaaacgcgccgaaggcatggattcttctctttgagtcgcttgtatgc gttgatgtggctgatcggctacaggcaaaaagaaaacttacaactcaacaaaaatcgcgt accgagcatggacaccctagtttgggtggtgatgaggacagcgtaaaagccgaagaacaa atcacaactttggaaagctcggtcgacactggggaaagagggacgattgggcgacgagct ttgaaaattctacagagccggcggtcggtaattaagcttcgagcggcgctagagatcgct gagcaaaacgggcatgatccatgcctcgaatatttgtatgagcatctacgaatgtacacg gagctgggggtcagtctacgcatgtctaaaaacggcccgtcgcttctccgcgcatgcagg cggcatggggacagagagccgcggctgtggatggaattgattcgcctgtacgcaccgctt gcagcaaaggaagggtacggaagcgagggggatgccatcggcgaggatctagagttggtc tcatcaagcccacctcgacgcgtttcacctatcgcaggggtggaatatgtgggtgaggac ggcggcatggggaaaatactcggcactatctctgatggcagctcggaacgcggcagcgct caagatctcgtagacgaggcgatggtggcgctagaccgcagcgggttgctatcgcaagtg gagattgtggagctcgtggagtcggcttgccccgacgctccatggagtgttgtgcgcgaa tatttcgaacgatgcgccgcagggctcaagcgggaggctgccgtgtcagagcacgccggg ctgcagctggacggggagatccgggaattgcgacgcgaggcgaaacggctgggggaggag accgtcgtgatcaagccgacgacgtgcgcgtcatgcgaggacgtggtctctgtccctgct gtgcacttcttctgcgagcactccttccacgtgagctgtctagcgcctggggccgtagga gttggaaatggggtgggtggggcgtctgcagcgatgcttgtgggaagggaaggggtcggg gcggggctatcgaatgagggaaagacagggatgtggggtgaggaatgtccccagtgcgca ccggagcttgacgcgatggtctccatgcgacaggcgttgcaggacaagaacaggaagcat gaagagtttttcgcgatgctgaagaattctcgcgatgggttcgcgacaattgtcgagttt ttgggacgaagcccgtttctatga

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