Chondrus crispus (carragheen): CHC_T00003182001
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Entry
CHC_T00003182001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00003182001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CHC_T00003182001
microRNA pathway
RISC loading complex
CHC_T00003182001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
ResIII
DEAD
dsrm
PAZ
Dicer_dsRBD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
17322079
NCBI-ProteinID:
XP_005714367
UniProt:
R7Q9W0
LinkDB
All DBs
AA seq
1775 aa
AA seq
DB search
MSQPVAEYPQTSPYGRTNTGNPEKNKKQSFSQPLMNHPLPILTSIATAAGLATMPQKEPI
ISVNASHTQDAPFGSDLPPHLIPRGYQFELFRRACKENVIAFLETGSGKTLVAALLIKKT
IEDLANTEAQINASPMNADEDLHDTEDDNESVDDLEYGDSDDDNNDTDGEDYEDNTKFDP
DEDDDQDSIQYSIEASDEDCDSSSDLGYTIGNIKSHEQHVIGDNHKESSTWVDSEQPKHT
RCKQYVSRREEPDRDWTLDPDNGPWSSTSELQVSSPDHAGAAGADMQSSSSSNSQKTSGM
LRTPQRRPGTRRQSPSPPPVNISPKACDDRVSGGVSVSSGAADFGCQGKKIAVFLVHRVP
LVPQQAKVVQSVMRADVDVGMYYGEKCVDWSSSQWARSLRTKRVLVMTAQVFLNLLRHGL
VGIRSIAVLVLDEVHHATKNHPYRRLFLEFYHTLPAGEPRPRVFGMTATPVKAKAASQKS
DPCLKAILALEATLDATVVTVSTEAQSEVEVLVPKPEEFIALFEGSEMNMELNEEELAEL
ETPSLASVMELVTSAHSKHPSDAQIAVRDSRLSDGKLEPQEGNTLNYLLWNLGFRAAAYF
ARELCALKGICSGDVVDALLQKSSEKDIKIGGITSRVSMLLDILFSEYMRCRGDLEVSAD
SKDLRETFRCIVFVKERVTAVALAWLINSVFKDLKCPELSARSAVGVQNSTSRVRMSQSK
LLTTLSDFQGGLFGILVATSVVEEGLDVPACRLVVACDVIMSPSGYVQRRGRARKRGARY
ISFLERGSEEAYNDASKARAGARMMSLVVSSEKAQDGDSLVYRNELVKGSLLSEDTLYSR
TTRAQVTGTEAVNLLYRYNEGKAAAAGFSDAPTPEYVLTRTSTGAFTCQVKLHATVSIGS
DVCISPQETELNAKRAAALEVYSRLYEAGEVDEFLLPKRQTKKRVRQILKTSNGQNTNVP
VRGRRRSDREKQTKSAKRDRRVRKCRIAHPDALQSPCNRVSHGPVSAEHVEEGPQNAILR
NLPHAERVVRGNSSANAEFLPDHTRRAATSVSEEQVEGQQMLMFRVQVDECLDELKFLSQ
STDPQFGILVKNDIPPEDWKSMRCPSGEDLISLQFKKRIPWNEEMQETAYKYVRSLQLCL
RGRAPGSPGAMELYEKDYSKNKRTGFLLLPLKKCESSSELDIDWPSIEKLLCFGWRCGPL
EFADHEQHLKQGLEHSLLCSYHESFGRVYLSGEFSTHLRASSSSQGFLNSNFKTFADYFL
KKHDTQVPDEELNLIEGYIVLDRMCGLSASPFMLPPELCRIIPIPPIACYIASILPQWQT
FLALRSCWRRNRICPDDEGFISFARALQPNINNIAKDDVDLSHERLEFLGDAVLKVLFSM
AAFVANPLDSEGFLSDERDIEVSNQKLADLAIEMKIQDCVAFSGVTQKAKSWPWFWGTHQ
NKSVPISQKVLADCVEALIGAHYLQGGIEAAAVFMDKHKVLPGGCSVLGISEDGRKSEGA
LVKVPDFGPSDNRKDSVYIEEVEKIIGYQFRDRGHLVVALTHGSFRNGHSPSYQRYEYLG
DAIIGCLLLSHLFDQYADAGPGDLTALRGPALSNDLFARVIVSLNIHERFWFECPPFEVE
IKKFANLLANERSGEDVCKQMTVPKVLGDLLEAIVGAVVIDKGMKLDGVKDIVLALMHKE
LRRFCDPESFKHNPVSELVQYVQRVHKLRPSYKYYNGENSIETECAILVNNREVFRASGP
TRRVAKHMAAVESLNILKKEQDGDGPILTKYDGSI
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagccggttgcagaatacccgcaaacctccccgtacggacgcactaatacaggc
aatcctgagaagaataagaagcaatctttttctcaaccacttatgaaccatcctttgccg
attctaacgtctatcgctacggccgcaggtcttgcaaccatgccgcagaaggaacccatt
atctctgtcaacgcttctcacacacaagatgccccttttggctcggacttaccgccccac
ctaatccctcgcggctaccagttcgaactctttcggcgggcgtgcaaggagaatgtcatc
gcttttttggaaacaggctctgggaagaccctagtggctgccttgttgataaaaaagacc
attgaagacttggcaaacaccgaagcccagatcaatgcatctcctatgaatgcggatgaa
gacttgcatgacaccgaagacgacaacgaatcagttgacgaccttgagtatggtgacagt
gatgacgacaacaacgataccgatggcgaggactacgaggacaacaccaaattcgaccct
gatgaggacgacgaccaagactctatccaatacagtattgaggcgagtgatgaagactgc
gacagcagttctgatctgggttacaccataggaaacattaagagtcatgaacaacacgtc
atcggagataaccataaggaaagttccacttgggttgactcagagcaaccaaaacataca
aggtgcaaacaatatgtctccagacgagaagaaccagatagagattggactcttgaccca
gacaacgggccctggtcgagcacttcagaactgcaagtctctagtcctgaccatgctgga
gcagccggagcagatatgcagtcgtcaagtagttcaaattcgcaaaaaacatctggaatg
ctgcggaccccgcaacgtcgtcctgggacccgtcggcagagcccttctcctcctccagtg
aacatatcgcctaaggcatgcgatgatcgggtcagcggtggcgtttctgtttcttctggc
gctgcagactttggctgtcaggggaaaaagattgctgtttttcttgttcatcgggttcct
cttgttccacagcaggcaaaggtagttcaatctgttatgagagcagatgttgacgtgggt
atgtattacggggagaaatgtgttgattggtcttcctctcaatgggcaaggagccttaga
actaaaagagttctcgttatgaccgcacaagtcttcctaaacttgcttcgccatggctta
gtcggcatcaggagcatagccgttttggttcttgatgaagtgcatcacgccacgaagaac
catccatatcgcaggctcttcttggagttttaccacacactacccgctggagaaccacgg
ccccgtgtcttcgggatgactgcaacgccagttaaagcaaaggctgcttctcagaagtcc
gacccctgcctgaaggctattctggccttagaggcaactttggatgccactgttgtaaca
gtgtccaccgaagctcagtcagaggtcgaagtattggttccaaaacctgaggaatttatc
gcattgtttgaaggaagcgagatgaacatggaactgaatgaagaggagttggcagaactt
gagacaccatcgttggcatctgtcatggaattagtcacgtcggcccactcgaaacatccg
agtgatgcacagatcgccgtgcgagattcccgcctgtcagatggaaaactcgagccacaa
gaaggaaacacactaaactacttattgtggaatctggggtttcgagcagcagcgtacttc
gctagagagttgtgtgccctgaagggcatttgttctggagatgttgttgatgcactactt
caaaaatcatctgaaaaggatatcaagataggaggaatcacttccagggtatctatgctt
ctcgacattctgttctccgagtacatgagatgcagaggggatttggaagtttccgcggat
tctaaagatttaagagagactttccgatgcatcgtgtttgtgaaagagagagtaacagcc
gtagcgctagcgtggttgatcaactcagtgtttaaggatttgaaatgtccagagctaagc
gccaggtctgctgttggggtgcaaaatagcacatctcgagtccgtatgtctcaatcaaag
ctgctgacaacactttcggattttcaagggggactcttcggtattcttgttgccacaagc
gtcgttgaagaaggtcttgatgttccagcttgtcgactggttgtggcgtgtgatgtgatc
atgtcgccgtcaggttatgtacagcgtaggggacgggcaagaaaaagaggtgctcgatat
attagctttttggagcgcggctccgaggaggcctataatgatgcctccaaagcccgtgca
ggtgctagaatgatgagcttggttgtaagctcggagaaagcgcaggatggtgatagcttg
gtctatcggaatgaacttgtgaaaggttctctgctgtccgaagacacgctgtactcaagg
acgacacgagctcaggttactggtactgaagctgtgaatttattgtatcgttacaacgag
gggaaggctgccgctgccgggttcagcgatgctccaacgcctgaatacgtcttgacaaga
acgagcactggagcatttacatgtcaagtaaagctccatgctacggtttcaataggatct
gatgtctgtataagtccacaggaaacagaactgaatgcgaagcgcgccgcggctctcgaa
gtctactcacggttgtacgaagcaggggaggtggatgaattccttcttccgaaaagacaa
acgaagaaacgagtgcgacagatcttgaagacttcgaacgggcagaatacaaacgttccg
gttcgagggagaagaaggagtgatagagaaaaacagaccaagtcggcaaagagagacaga
agggtacgcaagtgccgtattgcgcacccagatgcgttacaatcaccgtgcaatagagta
tcccatggtcctgtttccgctgagcacgtcgaggaggggccacagaatgctatcctgaga
aatctcccacatgcggaacgagtagttcgagggaattcttctgccaacgcggaatttctc
cctgaccacacacgacgtgcagcgacaagcgtctccgaggagcaagttgagggacagcag
atgcttatgtttcgtgttcaagttgacgagtgccttgatgaattgaaatttctatcacaa
agtacagatccccaattcggtatactggtgaagaatgacatcccaccagaggattggaag
agcatgagatgcccctctggggaagaccttatttccttacaatttaagaaacgaatccct
tggaatgaagagatgcaagagacggcctacaaatatgttcggagcttacaactttgtctt
cgtggaagagcacctggctctccaggggcgatggagctttacgagaaggattacagcaag
aacaaaaggacgggattcctccttctgcccctaaagaagtgtgagagcagttccgaactc
gatattgattggccaagcattgaaaagcttctctgttttgggtggagatgtggacctttg
gagtttgcagaccacgaacaacatctcaaacaaggactagagcactcgttactatgttcc
tatcatgaaagctttggccgcgtgtacctcagcggtgaattcagcacgcatctgcgtgct
agttcttcttcgcaaggtttcttaaattccaatttcaagacctttgcggactattttttg
aaaaaacatgatacgcaggttccggatgaggagcttaacctcatagaaggatatattgtt
ttggacagaatgtgtggtttgtcggcgtcaccatttatgctgccacccgagctgtgcagg
attatccctatcccgccaattgcatgctacattgcctccattttaccgcaatggcaaaca
ttcttagccctccgaagttgctggcgacgcaatcgcatctgtccagatgatgagggcttc
atatcgtttgcacgagcgttgcaaccaaatatcaacaatatcgccaaggatgacgtcgac
ttgtcccacgagcgtttagaatttctcggagatgctgtgttgaaggttctgttttcgatg
gccgcatttgttgccaaccctctcgacagtgaggggtttctcagtgacgagagggacatt
gaggtcagtaatcagaagctagctgatcttgcgatcgagatgaaaattcaagattgcgta
gcattctcaggcgtaacccaaaaagcgaaatcatggccatggttttgggggactcaccag
aacaaatcagttcccatatcccagaaggtactggctgattgcgttgaggcgttgataggc
gcacattaccttcagggaggcatagaggcggcagctgtattcatggacaaacataaggtc
ctgcctggaggatgcagcgttttgggaatttctgaagacgggagaaaaagcgaaggtgct
ctcgtgaaagtcccggactttggaccctcagataatcgaaaagattccgtgtacattgaa
gaagtagaaaagattattgggtaccaattccgcgacagggggcacttagtggttgcattg
acacacggaagcttccgaaatgggcacagcccctcataccagaggtacgaataccttgga
gatgcaatcatcggatgcttacttttgtctcatctgttcgatcaatatgccgatgcgggt
ccaggagacctgactgctttgcgtggcccagcactgagcaatgacttgttcgcacgcgtg
atcgtgtcactgaatattcatgaacgattctggtttgaatgtcctccttttgaagttgaa
atcaaaaagtttgcaaaccttcttgcaaacgaacgaagcggtgaagatgtctgcaagcaa
atgactgttccaaaggtactcggggatctattagaggccatcgttggtgctgtagtaatt
gacaagggcatgaaattggacggcgtcaaggacattgtgttagctctcatgcacaaagag
ttgcggagattctgtgaccctgaaagcttcaaacataatcctgtatctgaattggttcaa
tatgtacaaagggtgcataaacttcgtccatcgtacaagtactacaatggggaaaacagc
attgaaaccgaatgtgcaattcttgtgaataatagggaggtctttcgtgcgagtggacct
acccggcgagtggcaaaacacatggcagctgtcgagagcctaaatattctcaagaaagaa
caagatggcgacggtcccattctcaccaaatatgacggaagtatttga
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integrated database retrieval system
