Chondrus crispus (carragheen): CHC_T00003332001
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Entry
CHC_T00003332001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03022
Basal transcription factors
ccp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CHC_T00003332001
09124 Replication and repair
03420 Nucleotide excision repair
CHC_T00003332001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00003332001
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00003332001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00003332001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CHC_T00003332001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CHC_T00003332001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CHC_T00003332001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CHC_T00003332001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
ApoL
SPO24
Motif
Other DBs
NCBI-GeneID:
17322554
NCBI-ProteinID:
XP_005714825
UniProt:
R7QC81
LinkDB
All DBs
AA seq
777 aa
AA seq
DB search
MRIYIDGLCVYFPYPRVYPEQYEYMCELKKTIDAGGHCILEMPTGTGKTVTLLSFITSYH
LQRPEMAKLVYCTRTVGEMQKVLEELQIVSKYRDECFAEDNPEAAKSMPKMLALGLTTRR
NLCLHPVVSAKESRDEADAACRSLTASWVRSSVMEAQTEGGSMARNESLCEYFEGHQAEG
VNSMMPPGVYTLDDLMEFGRQKKWCPYYTARHCLSFANVIVYNYQYLLDPKIAGLISKNL
ARESIVVFDEAHNIDNICIDALSVNIREVTLRKSLGNIARLRETVGNVRNTNRARLRQEY
ERLVRGMSTSGIVPQLNVGDSMLASPNIREDIIEETVPGNIRKAEHFIQFLRRLVQYLRI
KKMTGRESKQEQPSSFLYELRQELQEDIRPLRFCSDRLKSLLQTLEISEVSEFTPLQLIA
DFATLLGTYGHTKSFGIVFEPVDERLPNIPDPVLQLACLDASLAMRPVFQKFQSVVLTSG
TISPLPLYAKILGFQPIVMKSLTMSMQRQAICPLIVSRGPDQVAISSKYDCRSDIAVVRN
FGNLCVELASTIPDGMVTFFTSYVYMEQMISMWHEMGIINRLFAKKLVFIETPDTVESAL
ALDRYRKACDAGRGAVFLCVARGKVAEGIDFDRHYGRAVLVIGVPFQFTESRVLRARLEY
MRSMLNIHEGDYLSFDAMRQTAQCAGRVIRNKNDYGVVVFADKRYVRADKRNKLPKWISD
LMPASQVDLDTQAALSVTKLYLRTMAQPPIEGEMKVALLSEDQVASLSASRFANVAN
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatttacattgatggtctctgtgtgtatttcccttatccaagggtctatccagaa
cagtatgagtacatgtgcgagctcaaaaagacaattgatgctggtggtcattgcatcctg
gagatgcctacaggaacgggcaagaccgttactctgctttccttcataacttcatatcac
ttgcagcgaccggaaatggcaaagttggtctattgcactcgaacagttggtgaaatgcag
aaggttcttgaggagttgcagattgtctcgaaataccgggatgaatgctttgcggaagac
aaccccgaggcagcaaagtccatgccaaaaatgctcgcgcttggtcttaccacgcgtcgc
aacctatgcctccatccagtagtctctgccaaggagagcagagatgaagctgatgccgct
tgccgctcgcttactgcatcatgggttcgcagttcagtcatggaagctcaaacagaaggt
gggagtatggcaagaaatgaatcgctttgtgagtattttgaagggcatcaggcggaggga
gtcaattcaatgatgccaccaggtgtttacactctggacgacctcatggaattcggtcgt
cagaagaaatggtgcccttactataccgccagacattgtctcagctttgctaatgttatt
gtctataactaccaataccttctagatcccaagatcgctggccttatatcaaagaacctt
gcgcgagaaagtattgttgttttcgatgaggcccataacatcgacaatatttgtattgat
gcgttaagtgtcaatattcgcgaggtgactcttcggaagagccttggaaatattgctagg
cttcgggaaaccgtcggaaatgtgcgaaacactaacagagcccgactgcgacaggagtat
gagcgattggtacgaggaatgtcaaccagtggcattgtaccacaactgaatgtcggagac
tcaatgctggcaagccctaatattcgtgaggacataatcgaggaaaccgttccaggcaat
attcgcaaagcggagcactttatccagtttctgcgaaggttggtacagtatcttcgaatc
aagaaaatgactggaagggagtcaaagcaggagcagccgtcaagctttctctatgaattg
cgccaggaactgcaagaagatattcgtccactaagattttgcagtgacagacttaagtct
ctgcttcaaaccttggagatatcagaagtttcggagttcacacccttgcaactaattgca
gatttcgccactttactaggaacctacggtcatacgaagagctttggtatcgttttcgag
ccggttgatgagcgcctaccaaatatcccggacccagttctccagctggcatgccttgac
gcatcccttgcgatgcggcctgtttttcagaagtttcagagcgttgtgcttacgtcaggc
acgatatcgcctttacccctgtacgcaaaaatcctgggcttccagcctattgtaatgaaa
tcactgacgatgtcaatgcaaaggcaagcaatctgcccgctcattgtttccaggggccca
gatcaagttgcaatcagctccaaatacgactgccgctccgatattgcagtcgtacgtaat
ttcggcaatctgtgcgttgaactcgccagtacgatcccagatggaatggtgacttttttc
acatcatatgtttatatggaacagatgatctctatgtggcatgagatgggaatcataaat
cgtttgttcgcgaaaaaactcgtgttcattgagacaccggacacagttgagtcggctcta
gcacttgacagatatcgaaaagcatgtgatgccgggagaggggcggtgttcttgtgtgtt
gcacgggggaaggtggcggaaggaatagatttcgatcgccactacggccgggcagtgctt
gtaatcggagtgccctttcagttcactgaaagccgtgtactccgagcaaggcttgagtat
atgcggagtatgctgaatattcatgagggagattacctatccttcgacgctatgaggcaa
acagcgcaatgtgctgggcgtgtcatcaggaacaagaacgattacggagtggtggttttt
gccgacaagcgatatgttcgggccgataagagaaacaaactaccgaaatggatcagtgat
cttatgccagcatctcaggtagaccttgatactcaggctgctctaagtgtcacaaagtta
tatctaaggacgatggcccagcccccgatagaaggggagatgaaagttgcccttctatct
gaggaccaagtggcttcactcagtgcaagtcgattcgcaaatgtagctaactag
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