Chondrus crispus (carragheen): CHC_T00003618001
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Entry
CHC_T00003618001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00003618001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHC_T00003618001
Spliceosome [BR:
ccp03041
]
Complex C
Other components
Complex C specific factors
CHC_T00003618001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
17322235
NCBI-ProteinID:
XP_005714519
UniProt:
R7QB54
LinkDB
All DBs
AA seq
690 aa
AA seq
DB search
MQFWRPGEEFRPDREEILAAGIQKPLLSDHQRVRVLYALEQGKNVIIQGDPGTQTSKVIA
SHLVAAGWSLDGRCVAVALPRQVAVISSVVHVAEDNSLDESHLGGDHVGFVLESSVKRSS
TTKLVYFTNRSLLQTLLKEPLLGSVSVVIVDQFHERSIGADLLLALLKKVQRVRTDLCII
VITAEFTDRICSYLGKARTTQMFIAQRGFPVSIFYTKRPVEDYLQTAMKVIQDAFLQWIR
AGQPDSTGVLMFVQGTEEAELFCSTINEWSKTNSEVLRSNGPKESDGSFRKKNGSAQQVL
AVSLYSGLDVGQQLSVLSNAVNENCLKVVVSTNIAETTVTVPGISTVIDCGLERVEMFDP
RMKTSFISTVQISATSARRRAARAGINQHGSCFRLYTHGHFKSAMAESRPPAVLRCELTE
MVLILKAIGVVDVTSFDFLERPDGGLVIDALERLFFLGAISGTGSLTTETGVRICLSSAN
PRIGKCILVGESYGIGRVMAAVAALLEVRQVLFNTGRSSRSSRALFSVAEGDIITMLNVW
RRYVNSSFSDSWCADHGINPAVMQKVRRSFARIVRTNLRLQSKDERFAAARKAIGLSLVE
CVCRSITAGYFENAAMVEPDGSYLVALPGRRVKIHRQSVLYKRMPKWVTYMDLSQSSTTC
EMKDVTVIQPQWLTEYARHLFETVTEKFQS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttggcgccctggtgaggaatttcgtccggacagagaagaaattcttgccgct
ggaatacaaaaacccctgctttcagatcaccagagagtgcgggtgctatatgctcttgaa
caaggcaaaaacgttatcatacaaggagaccctggaactcagacatcaaaggtcatcgca
agtcacttagttgcagccgggtggtcattagacgggcgttgtgtcgcggttgcactccca
cgccaagttgcggtgataagctccgttgttcatgtcgctgaagacaactctttggacgaa
tcacatctgggtggtgatcatgtcggcttcgtattagaatccagcgtgaagcgttcatct
actacaaaactagtctacttcactaatcgctcgttgttgcagactctcctgaaagaaccg
ctattgggatctgtgtccgtcgtcattgtagatcaatttcatgagcgcagtatcggcgct
gacttgttactagcgttgttgaagaaggttcaaagggtgcgcactgacctttgtattatt
gtaataactgcagagttcacagatcgcatatgctcttatctcggaaaggctcgcactaca
caaatgttcattgcacagcggggatttccagtgagtatcttctacacaaagcgcccggtt
gaagactatttacaaactgccatgaaggtcatccaggatgctttcttgcaatggattcgt
gctggccaaccagattcgacgggtgtactcatgttcgtgcagggcacggaagaagcagaa
ctattttgcagtaccataaatgaatggtctaaaacaaactctgaagtgctgaggagcaat
ggtccgaaagagtctgacggttcattcagaaagaaaaatggatctgcgcagcaggtcttg
gcggtttcgctttattctggtcttgatgtcggtcaacaactttctgttttatcgaatgca
gttaatgagaattgtctgaaggttgtcgtttctacgaatattgcagaaacaaccgtgact
gtgccaggtattagtacagttattgattgcgggctcgaaagggttgagatgttcgaccca
cgtatgaaaacaagcttcatctccacagtccaaatatcagccacatccgcgcgaaggagg
gcagccagagctggtattaatcaacatggcagttgcttccgattatatactcacggtcac
ttcaaatctgctatggcggagagccggccaccggcagtccttcgctgcgaacttacggaa
atggtgctaatcctgaaagcaataggtgtggttgatgtcacttcgtttgactttctcgaa
agaccagatggtggtctagtgatcgacgcgcttgagcgcttgtttttcctgggtgctatt
tccggcaccggtagtctcaccacagaaactggtgtacgtatttgcctatcgtctgctaat
cctcgcataggcaaatgcattcttgtaggggagtcttacggcatcgggcgcgtgatggca
gcagttgcagcattgctcgaagtaaggcaggtgctatttaacacagggcgcagcagcaga
agctcgagagcgctattttccgtggcggagggagacataatcacaatgctcaatgtctgg
aggcgatacgtcaatagcagcttctcagattcgtggtgtgcggatcacggcatcaaccct
gccgtaatgcagaaggtgagacgttccttcgcgaggatagtaagaacgaatttgaggctg
caatccaaggatgagaggttcgcggcggctcgtaaggcgattggtttgagcttggttgag
tgtgtctgtcggtcgattaccgctgggtactttgaaaacgctgccatggttgagccggat
ggatcatatctcgtagctttaccaggaagaagggtcaagatacaccgccagagtgtgcta
tacaaaaggatgccgaagtgggtgacatacatggatctctcgcaaagttctacgacgtgc
gaaatgaaagatgtcacggtcatacaaccacaatggctcacggagtacgccagacatctc
ttcgaaactgtgacagagaagtttcaatcgtaa
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