Chondrus crispus (carragheen): CHC_T00003885001
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Entry
CHC_T00003885001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K12849
pre-mRNA-splicing factor 38A
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00003885001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00003885001
Spliceosome [BR:
ccp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CHC_T00003885001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
17322850
NCBI-ProteinID:
XP_005715138
UniProt:
R7QB68
LinkDB
All DBs
AA seq
186 aa
AA seq
DB search
MANKTDTYALHSRGTDPQNLLEPSLRHSVYLSRFWNESCFGVTLADVVPLAARLDRISAV
TAPPTPFLCLLLKLLQLSPEEPEIAVFLTQNDFKYARLLGAFYVRLALPPPRVYALLEPL
LADLRKIVVREGASAEHAIVHVDELIDRLLREHLVVGITLPRLPPRHVVEESFVQLPPRP
QLLQGL
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaagacagacacctacgccctgcactcgcgcggcactgatccgcagaatctc
ctggagccatcgctccgccacagcgtgtacctctcgcgcttctggaacgaatcctgtttc
ggcgtgacactagccgacgttgttcccctcgccgctcggcttgaccgtatctctgccgtc
accgcccctcccaccccctttctctgcctcctcctcaagctgctacagctctcccccgag
gagcccgagatcgccgtgtttcttacgcaaaacgactttaaatacgcgcgcctgctcgga
gccttctacgtgcggctcgccctaccgcccccacgcgtatatgcattgcttgagccgttg
ctggcggacttacggaagatcgttgttagagaaggagcatccgcggagcatgctatcgtt
catgtcgatgagctcatcgaccgcctcctgcgagaacatctcgttgttggcatcacgctg
ccgcgcttaccgcccaggcatgtcgtcgaggagagctttgtccagctgccacctcgacct
cagcttctgcaaggcttgtag
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