Chondrus crispus (carragheen): CHC_T00004187001
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Entry
CHC_T00004187001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K03124
transcription initiation factor TFIIB
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CHC_T00004187001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00004187001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
CHC_T00004187001
Prokaryotic type
Archaeal type
TFB
CHC_T00004187001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Motif
Other DBs
NCBI-GeneID:
17323258
NCBI-ProteinID:
XP_005715543
UniProt:
R7QCC1
LinkDB
All DBs
AA seq
611 aa
AA seq
DB search
MLSPLREPVYAASARTLSGSLAEMERIIGETLFSGYVGYNGRAPGSTTKKEELQESAERN
RTGGDARHTLVAYFEIVELASILCVDRETTNLAIRTFRHTANNTSLRNRNVESLATAAFV
SAAERRWNEYQDWSKREKGAVPSDKEPHLPARDEDAPAASSSEWPTVPRHLSVEEISTAA
NLDVAEVVRYLKVVNIALRKQRPENSSSIAAHMPTFCSRLDLPERTRRLAIGIAEKAMEN
NICSRRYPPSLSAAAIRLACQLDGVRKTQVEICRATPVTDVTLRKVHKELIRDESMVIPE
WYTNDKRQQTEATFSETGRPFARPAAKRATERASSSQEDREESPSDEKTGPAADSSDLGS
QQEEPNVSLVPPPLPPGFGKGQGRPKAKREEEKKAEPVVSQPQPPMPNSNPMLAMLNNPA
MQAFANVFAMMPQLSPPPPPALPPLPSASDSKGPQVQARGPGDSSERADAREVTPPPENG
VGKKNEESRSLAATKPEQSQPVQSSQPLQANGNLMGGVQSMMKMVQAMQAIQAMQKQTVE
QEGGEATEQLNPIAMMAMAMAQAQNAVAMASKSTVAQAQPNAPQDSSQAKPALDEPGPEA
QGTKEQNQLEN
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccccactgcgcgaacccgtttacgctgcatctgctcgcacgcttagcggttcg
cttgcggaaatggagagaataatcggcgaaacactcttttccggttacgtgggatacaac
ggcagggcgccaggtagcacgacaaagaaagaggagctgcaagagtctgcagaacggaac
agaacggggggcgacgcgaggcacaccctggttgcttacttcgagattgtcgaactcgca
agcattctttgcgtggacagagagaccacaaacttggcgattcgcacgttccgtcatacc
gccaacaacacgagtcttcgcaatagaaatgttgaatcattagcaaccgctgcgtttgta
tctgcagcggagagaaggtggaatgagtaccaggattggtcgaaacgggagaaaggggcc
gttccaagtgacaaggaacctcaccttcctgcgcgtgatgaagacgctcccgcagcatcg
tcttcagaatggcctactgtgccaaggcatctctcagtcgaagagatttccacggcggcc
aatctggatgtggccgaggtcgtgcgatacctgaaagtagtcaacattgccctccgtaag
cagcgtcctgagaatagttcttcaatcgctgcgcacatgccaacgttctgcagtcggtta
gatctcccggagaggactcggagacttgccattgggattgcggagaaagccatggagaac
aacatttgctcgcgacgttatccaccctcgctctctgcagcggccatccgtttggcatgt
cagctggacggcgtccggaaaacgcaagtggaaatatgccgtgcaactccagtcacagac
gttactcttcgcaaagtgcacaaggagcttatccgtgacgaaagcatggtgataccggaa
tggtacacgaatgacaagcgtcagcagacggaggctacgttttctgagactgggcgccct
tttgcgagacctgctgcaaagcgtgccactgaacgggcctcttcctcgcaggaagacaga
gaagagagtccaagtgatgagaagactgggcctgcggcagatagcagcgacttgggttct
caacaggaggagccaaacgtctcacttgttccgccgccccttccccctggattcggcaag
ggacaaggacgtccgaaagcgaagagagaagaagagaagaaagcagaaccagttgtatcg
cagccgcagccgcctatgcccaacagtaaccctatgcttgcaatgctcaacaatcctgct
atgcaggcatttgcaaatgtatttgcgatgatgccgcagctcagtcctcctccacctcct
gcgctacccccacttccgtcggcgtcagattcgaagggccctcaggtgcaggccagggga
cctggagattcaagtgaaagagctgatgcgagggaagtcaccccaccacctgagaatggt
gtaggaaagaagaacgaggagtctcgttcattggctgcaacaaagcctgagcagtcgcaa
cctgtgcaatcatctcaacctctacaggcgaatggaaatttgatgggtggtgtgcaatca
atgatgaaaatggttcaagccatgcaagcaatccaggcgatgcagaaacagactgttgag
caagagggaggggaagctaccgaacaactcaacccaattgcaatgatggcgatggcaatg
gcacaagctcaaaatgccgtggcgatggcgtccaaatccacggtggctcaagcgcaaccg
aatgcaccacaagattcctctcaagcaaagccagcgttggatgaacctggtccggaggca
cagggaacgaaggaacaaaatcagctggagaactga
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