Chondrus crispus (carragheen): CHC_T00004762001
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Entry
CHC_T00004762001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHC_T00004762001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccp03041
]
CHC_T00004762001
Enzymes [BR:
ccp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHC_T00004762001
Spliceosome [BR:
ccp03041
]
Complex C
Other components
Step II factors
CHC_T00004762001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
AAA_19
Flavi_DEAD
AAA_30
AAA_16
ResIII
AAA_14
ABC_tran
SLFN-g3_helicase
PhoH
NB-ARC
AAA_23
AAA_7
Motif
Other DBs
NCBI-GeneID:
17324051
NCBI-ProteinID:
XP_005716337
UniProt:
R7QFK3
LinkDB
All DBs
AA seq
1088 aa
AA seq
DB search
MTFHRPITFFFLLHDIAPLFDLRRPEINNSLPPSKMSSRWDVEPPSATDSPRQLPSQSQP
NPTASEKPSTLFRSRRRPTKKRRRALSDVLEQPTSAPKFTPASLPHPPKTPQALAKPPPR
VPARPEKQISASTPPTRRSRWDAIDERYHKAAALPSTSFTPSSYGRASTPFSSTTPTDAA
QSSAPDDAGYKAYEQEQDRAEREWYLGEYSDRTLPVADEAAVAERQSRRLTAKAAARNAD
AVRWEERQMGFALYANVKRSAMSADISDDAAPRVALLVKELVPNFLRRETIVNEKAVLAM
GGKGNAVIGQDVVLPVKDPTSNMAIIARKGSQTVEHYRETRERGKARTKYWELEGATGAK
DKEHAEMDAEKDARIAAAIAAPEDWKKDMKFSTALKRQKNPSSNDGADATLNTAESVAIT
RRSLPVYSVKNQLMNIIREHQICVIVGETGSGKTTQLTQYLEEEGYARFGIIGCTQPRRV
AAVSVAQRVSEEFHGGSELGQQVGYTIRFEDSTSEKTVIKYMTDGILLRESLGDPELERY
SVIIMDEAHERSLNTDVLFGVLRGVVTRRQDLKVIITSATLNAEKFANFFGAAPIFKIPG
RTFPVDTFFSKTPIEDYVDGAVWQAIQIHIQAPLPGDILIFMTGQEDIETTCEALAEKIG
RLEKPRPLLILPIYSQLAADLQAKIFEPAPEGYRKVVVATNIAETSLTINGIHYVIDSGY
CKLKTYNPRLGMDALLLCPASQSSANQRSGRAGRTGPGKCYRLFTSSAYVTEMLDTNVPE
IQRTNLSHVVLLLKTLGVKDLLDFPFLDPPPAENILKSMLGLWLLGAFDLDGNLTKLGRR
MAIFPLDPALSNLLFRGEEFGCLLEAVTIVAMLSVPNVFMRPHGREDESDSAREKFFVPE
SDHLTLLHVYQRWRAAGCRTDWCAKHYISGKSMRKAREVREQLLEIVRSEGMAETSTDEW
DSIRRAIASAFFYQAARRKGIGEYINIRSGVVCGLHPTSALYGTGLSPDYVVYHELIMTR
KEYMSCVTAVDPHWLAEAGPALYILKQAGEEGVQAAKRLRERRAKIEDQMRLSSQETLES
KVPSESGK
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgacattccatagaccgatcaccttcttctttctcctccacgacattgccccgctcttc
gacctccgtcgtcccgaaatcaacaactccttgccgccttccaaaatgtcctcccgatgg
gacgtggagccaccctccgccaccgactcccctcggcagctcccctcccaatctcaaccc
aacccgaccgcatccgaaaagccatcgacactgttccgctcgcgcagaaggcccaccaag
aagcggcggcgcgcgctttccgacgttctggaacaacctacctccgcacccaaatttacc
ccagcatctctcccacaccccccgaaaaccccccaagcactagcaaaaccgcctccccgc
gtccccgccaggcccgagaagcaaatctcggcctcaacgcctcctacccgccgctctaga
tgggacgcaatcgacgaacgctaccacaaagctgctgccctcccctccacgagtttcacc
ccttcctcctacggcagagccagcactccgttctcctcaaccacccccaccgatgccgca
caatcttctgctcccgacgacgcaggttacaaagcatatgagcaggagcaggaccgcgcc
gaacgcgagtggtatttaggcgagtactctgaccgtacgctgcccgtcgctgacgaagca
gccgtcgcagagcgtcagtcgcgacggcttacggccaaagcagccgcgagaaacgctgat
gccgtacggtgggaagagcgccagatgggtttcgccctttacgcaaacgtgaaacgctct
gctatgagtgcagatatttcggatgatgcggcgcccagagtggcgttactagtgaaggag
cttgtgcccaattttttgaggagggaaacaatagtcaatgagaaagcggtcctcgcgatg
ggagggaaggggaacgcggttattgggcaggatgttgtattgccagtgaaagaccccacg
agtaatatggcgattattgcccggaaggggtcgcagacagtggagcattatcgggaaacg
agagagcggggcaaggcgcgtacgaaatattgggagcttgaaggtgcgactggggccaag
gataaggagcatgcagagatggatgcggagaaagacgcgaggatagctgctgccattgcg
gcgccagaggactggaagaaggatatgaagttttcgacggcgttgaagcggcagaagaac
ccatcgagtaatgacggtgctgatgcgaccttgaatactgcagagtctgttgcgatcact
agaagatctttgcccgtttattctgtaaagaatcagctgatgaacatcatccgtgagcat
cagatttgtgttatcgtgggggagacagggtctggaaagactacacagctgacccagtat
cttgaagaggaaggatacgctcgtttcggcattatcggttgtacgcaaccgaggagagtt
gccgccgtatctgttgcgcagcgggtctcagaggaatttcatggcgggtcggaactgggg
caacaagttggatataccattcgcttcgaggattcgacgagcgaaaagacggttatcaaa
tacatgacagatggcatattgctacgggagagcctaggcgacccagagctagagcgatat
tcggtcatcattatggatgaagctcatgagcgaagtctcaatactgacgttctcttcggt
gtgctgagaggtgttgtgaccaggcgtcaagatctcaaggtcatcattacaagcgcaacc
ctgaatgcggaaaagttcgctaacttcttcggtgccgccccaatcttcaaaatacctggg
cgaacatttccagtagataccttcttttctaagaccccgatcgaagactatgtggatggc
gccgtctggcaggcaattcagatacacattcaagccccactcccaggtgacattctcatt
ttcatgacggggcaagaagacatcgaaacgacatgtgaggcattagctgagaagattggg
aggcttgagaagccgaggccgttgttgattttgccgatttactcgcagttggcagctgat
ctccaagccaagatattcgagcctgcgccggagggatacaggaaagttgttgttgctacg
aatatcgccgaaaccagtttaactattaatggtattcactacgttatagattctggatac
tgcaaattgaagacatacaatcccagactcggtatggatgcattgctactctgtccagca
tcacaatcatcggcaaaccaacgttcagggagggccggtcgaacgggacctggtaaatgt
tatcgattgttcaccagctcggcatacgtgaccgaaatgctggacacaaatgtaccagag
attcaacgcacaaatttgagtcacgtggtattgcttttaaaaactcttggagtgaaagac
cttctcgactttccttttttggatcctccccccgcggagaacattttaaaatccatgctc
gggttatggctcctcggagcatttgacctggatgggaatctgacgaagttaggtagaaga
atggctattttcccattggacccagcactatcgaatctactgtttcgaggagaggagttt
gggtgccttctggaggctgtcacaatcgttgcaatgctatcagtcccgaacgtgttcatg
cggccacatgggagagaagatgagagtgatagcgctcgggaaaaattcttcgtgcccgaa
agcgaccacctaacactgcttcatgtgtaccaacgctggcgagcagccgggtgcaggaca
gattggtgcgcaaagcactacatcagcggcaagagcatgagaaaagcacgagaggtgcga
gagcagcttttggaaatcgtgcgatctgaaggcatggcagaaacctctactgacgaatgg
gactcgatccgcagggctatcgcgtctgccttcttctatcaagcagctcgcagaaaaggt
atcggtgaatacatcaatattcgatctggtgtggtatgcgggttgcatcccacatctgca
ttgtacggcacaggtctgagcccggattatgtggtttaccacgaattaataatgacaaga
aaggagtacatgagttgcgtgacagctgttgatccacattggcttgccgaggcaggtccc
gctctatacatactcaaacaggctggtgaggaaggagttcaagctgcaaaacgcttgcgc
gagcgacgcgcaaaaattgaagatcaaatgcgtttgtcaagccaagaaacacttgagtcc
aaggttcccagcgaatcaggaaagtag
DBGET
integrated database retrieval system
