Chondrus crispus (carragheen): CHC_T00005284001
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Entry
CHC_T00005284001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccp03016
]
CHC_T00005284001
Enzymes [BR:
ccp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CHC_T00005284001
Transfer RNA biogenesis [BR:
ccp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CHC_T00005284001
Prokaryotic type
tRNA splicing ligases
CHC_T00005284001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
17324370
NCBI-ProteinID:
XP_005716662
UniProt:
R7QGD8
LinkDB
All DBs
AA seq
906 aa
AA seq
DB search
MRGAWGCISGSVLSFPVRPGQRRRSCDCNAKTTDRLQTLPLSPPTRPPSHSPHRPHSTIP
PHPFHDGLPTPCPHPRPLPFALLPARLHALLPRSHAHAHSPNLLLLRHRAPPPPALAHLV
HRPRKPSPSSLPPARRRASQSRGPPGAHDLRLASRASPGATFPPCLPSRQARGAPPDSRT
TARAGAQHDVAAERRGDRRVARRARRAELAARVHRRDGPRPGRARRARRRACGRARQRQG
RGRGGEGRGGARDGAAGGGAGRGGDEDGAGRGRGLPRRAAEEGGGGALCRGEGDRLERFG
RVARGSRGRVAGEGAVDCGAVDCGAAGRSCWMSVVFRNGLAGHLLPNYSTYIVSRGYVST
WSIKQALAATTGTNPKTTCLQCVNPPLLQAMEVEKPTPKPRRRTYEEELSYLRLVAPCRY
DISIGFVPNMLAPGTFYVNEVLAPLVKAELERAAKNPSLSGGFLPAVKQIANVSSLPGIV
ARSIAMPDVHSGYGFAIGNVAAFDMDDPQAVVSPGGVGFDINCGVRLLRTNLMEQDVQPV
KDVLAQTLFDHIPVGVGSKGIIPTTIQSLEAALELGMDWSLREGYAWPEDKEHCEENGRM
LQADPCKVSARAKKRGLSQLGTLGAGNHYAEIQIVDEIFDETAAAAMGVTTVGQVVVMIH
SGSRGLGHQVATDALQHMEKAMARDGIEVNDRQLACARIASKEGQDYLAGMAAAANFAWV
NRSSMTFLARQAFAKVFGKSPAELDMHVIYDVSHNIAKVETHNVDGKVKKLLVHRKGATR
AFPPHHPLVPCDYQMTGQPVLIGGTMGTCSYVLLGTEHGMKETFGSTCHGAGRAQSRSAC
RRQLNYEEVLNNLEGKGIAIRVASPKLVTEEAPESYKDVSAVVDTCDQAGISRKCLKLRP
VAVIKG
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcgcctggggatgtatctcaggttctgtcttatcgttccccgtgcgcccaggg
cagcggcgaaggagctgcgattgcaacgccaagactacagacagactgcagactctcccc
ctttcaccaccaactcgtcccccgtcccattctccccatcgcccccattccaccatccct
cctcacccttttcacgacggactccccaccccctgcccccatccccggcctctccccttc
gcactactacccgcccgtctacacgccctcctcccccgatctcacgctcacgctcactct
ccaaacctcctactccttcgccaccgcgctcccccccctcccgcactcgcacacctggtc
catcggccccgaaagcctagtccatcttcgctaccgcctgctcgccgtcgcgctagtcag
agccgcggcccacccggcgcacacgatctacgtctcgcaagtcgtgcctctcccggcgca
accttcccaccttgcctaccttcccgacaggcgcgaggcgcgccaccagatagtcgcaca
accgcccgcgccggcgctcaacacgacgtcgctgccgaacgacgcggcgatcgccgcgtc
gctcggcgtgcgcgtcgcgcagagctcgctgcccgtgtccatcggcgtgacggcccgcgt
cccgggcgcgcacggcgtgcgcgtcgccgtgcgtgtggtcgagcacgtcagcgtcaaggg
cgaggtcgtggcggggaaggccggggcggcgctcgtgatggagcagccggtgggggggcg
gggcgaggtggagatgaggacggagctggtcgtggacgaggtttaccccgacgcgcagct
gaggaaggtggaggtggggcactttgtcgaggcgaaggtgatcgcttggagcgatttggg
cgggtggcgagaggtagcaggggacgcgttgcaggtgagggtgccgttgattgtggtgcc
gttgattgtggtgccgctgggcgcagttgctggatgagcgtcgttttcagaaacggcctt
gctggacatctccttccgaattacagtacttacatagtgagtcgtgggtacgtgtccacg
tggtcgataaagcaggccttagcagcgactacaggtaccaacccgaaaaccacctgcctc
cagtgtgtcaacccacccctccttcaagccatggaggtcgaaaagcctacccccaagccg
cgccgtcgcacctacgaggaagagttgtcctaccttcgtcttgttgccccatgccgttac
gacatctccatcggcttcgtccccaacatgcttgccccaggcaccttttacgtgaacgaa
gtcctcgccccgctggtcaaggccgagcttgagcgcgccgccaaaaacccgtctctctcg
ggcggctttctgcccgccgtcaagcaaatcgccaacgtctcctcactcccgggaatcgtc
gcacgctctatcgccatgcccgacgtccattcaggctacggctttgccatcgggaacgtc
gcggccttcgatatggacgacccgcaagccgttgtctcgccgggtggtgtgggctttgac
ataaactgcggcgtccgtctgctgcgcaccaatctcatggagcaggatgtccagcccgtc
aaggatgtgctcgcccagacgctcttcgaccacatccctgtcggcgttggttcaaaaggc
atcatcccgacgaccatccagtctctcgaggccgccctggagctcggtatggattggtcc
ctgcgtgagggctatgcctggccggaggacaaggagcactgcgaggagaatggccgcatg
ctccaggcagacccgtgcaaagtgtctgcacgtgcgaagaagcgcggcttgagccagctg
ggcacgctgggcgccggcaatcattacgctgagatacagattgtggatgagatctttgat
gaaacggcggctgcggcgatgggcgtcactactgtgggacaagtcgtcgtcatgatccat
tccgggagcaggggcttaggacatcaggtggctacggatgctttgcagcatatggaaaag
gcgatggcgagggatggaatcgaggtgaatgataggcagctcgcgtgtgcgaggatcgcg
agcaaggaggggcaggattatttggccgggatggcagcggcggcgaattttgcctgggtc
aaccggagctcgatgacgttcttggcgagacaggcgtttgcaaaggtgtttggaaagtcg
ccggcagagctggacatgcacgtgatctacgacgtgagccacaacattgccaaagtggaa
acgcacaatgtagatgggaaggtgaagaagttgctggtgcatcgtaagggggcgacgcgg
gcttttccgccgcaccatccgctagtgccgtgcgactaccagatgacggggcaacccgtg
ctgatcggagggacgatggggacgtgcagctatgtgttgcttgggaccgaacatgggatg
aaagagacatttgggtcgacgtgccatggggcggggcgggcgcagagccggtccgcttgc
cggcgtcagcttaactatgaagaagtgttgaacaacttggagggcaaggggattgcgatt
cgcgtcgcgtcgccaaagctggtcactgaggaggcgccagagagttacaaggacgtatcc
gcggtagtggacacatgcgaccaagccgggatttcgcgaaagtgccttaagctgcggccg
gtggccgtcattaaaggctag
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