Chondrus crispus (carragheen): CHC_T00005398001
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Entry
CHC_T00005398001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K10756
replication factor C subunit 3/5
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03030
DNA replication
ccp03410
Base excision repair
ccp03420
Nucleotide excision repair
ccp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHC_T00005398001
03410 Base excision repair
CHC_T00005398001
03420 Nucleotide excision repair
CHC_T00005398001
03430 Mismatch repair
CHC_T00005398001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccp03032
]
CHC_T00005398001
03036 Chromosome and associated proteins [BR:
ccp03036
]
CHC_T00005398001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00005398001
DNA replication proteins [BR:
ccp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
CHC_T00005398001
DNA Replication Termination Factors
ELG1-RFC complex
CHC_T00005398001
Chromosome and associated proteins [BR:
ccp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
CHC_T00005398001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
CHC_T00005398001
Check point factors
HRAD17(Rad24)-RFC complex
CHC_T00005398001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_22
RuvB_N
AAA_14
AAA_7
AAA_11
AAA_assoc_2
AAA_30
DEAD
AAA_16
IstB_IS21
AAA_19
AAA_5
bpMoxR
TniB
DUF815
ResIII
AAA_24
AAA_18
TIP49
AAA_3
DNA_pol3_delta
Motif
Other DBs
NCBI-GeneID:
17325036
NCBI-ProteinID:
XP_005717324
UniProt:
S0F304
LinkDB
All DBs
AA seq
326 aa
AA seq
DB search
MWIEKYRPQGLDDLLSHQEIIATLRTLISNNRLPHLLFCGPPGTGKTSTILACAKEMYGS
SFKSMVLELNASDDRGIGVVRDQIKSFASTKRIFSSGVKLIVLDEADAMTTAAQMALRRV
VEKYAANTRFCIICNYVNKIIPALQSRCTKFRFGPLPADDVRKRVLEIAAFESVSISSDG
LEALLILGKGDMRRILNVLQSTHLASSGARGGEITADAVYSNTGAPHPGDVKAAWGWLLE
RTFPDSSAKLRTLMQDKGLALGDIITELFPLVSTSSLSKNAKMYMFESLSDIEYRMATGS
LEKLNMAALIGCCKFASAMNAGSFSL
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgtggatcgaaaaatatcgacctcagggccttgatgacctcctttcacaccaagagatt
attgctacgttgaggacccttatttcaaataatcgccttcctcatcttcttttctgtgga
cccccagggacaggtaagacatcaacaatacttgcttgtgccaaggaaatgtacggctcc
tcgtttaagtccatggtacttgagcttaacgcctctgacgaccgcggcattggtgtggta
cgagatcagatcaagagttttgcctctacgaaacgaatattttcgagcggtgtcaaactt
atagtgttggatgaagcagatgccatgaccacggctgcacaaatggctctgcgccgcgtt
gtggaaaagtatgccgcaaacacacgcttctgcattatttgtaactatgtcaacaaaatc
atcccagccttgcagtcgcggtgcacaaagtttagatttggaccgctccccgctgatgat
gtgcggaaaagagttctggaaatcgcagcgtttgagagcgtatcaatatcctccgatgga
ctcgaagccttgctaatcctaggcaagggtgatatgcgaagaatcctcaacgttttgcag
tcaactcacttggcctcgtccggggcccgggggggtgagattacagcagacgcagtctac
tcaaacacaggcgctccgcaccctggggatgtgaaagctgcttggggctggctgctagaa
agaacttttccggactcatctgcaaagctgcgaacactaatgcaagacaaaggacttgct
ctcggagacatcatcactgaactgtttccacttgtctcgacgtcatccctttctaagaac
gccaagatgtatatgttcgaaagtctttcagatattgagtaccgcatggccacaggtagc
ttggagaaactcaacatggcagcactgataggttgctgcaagtttgcttccgcgatgaac
gcaggatcgttttctttgtga
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integrated database retrieval system
