Chondrus crispus (carragheen): CHC_T00005540001
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Entry
CHC_T00005540001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
ccp
Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccp03016
]
CHC_T00005540001
Enzymes [BR:
ccp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
CHC_T00005540001
Transfer RNA biogenesis [BR:
ccp03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
CHC_T00005540001
Prokaryotic type
CHC_T00005540001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B_4
Anti-Pycsar_Apyc1
Lactamase_B
Yop-YscD_ppl_3rd
Motif
Other DBs
NCBI-GeneID:
17324409
NCBI-ProteinID:
XP_005716700
UniProt:
R7QHD9
LinkDB
All DBs
AA seq
775 aa
AA seq
DB search
MHSYVEVIGPGTPDASSSLHLFFDEGRYLFECGDGTQRLCTEYGIKLGRLRSIFLTSLAA
PSIGGLLGLNLTLADAGKESVSITAPKGLASIFKAARSFYYRPSLQSTLHEVDLEASVEP
LPVLVLEDENVNITAIPVRSRRDIEIDTAFGAHFDALAYVCRLHDLRGKFNPARAMELGV
KKGRLFGQLQRGVPVTTDNGVTVTPEQVMSKSTPGPMFLVIPCPTVNHIQAITKSKALNP
VELGILSADASSNLMRRCVVAHLAPKHVLENTAYREWCDSFGADVSHIPLHPSVSSPRTV
FSTHATDAALLHFTVDKDLFPLPSDALDASSLVSVSEARSSRSNPESAMPLSMCKPAQPE
GFRTDEGFPSFCLNRTGTWLEGDCKMKFVLSPSANAGPDMGAVRPRFIERIAGQPKHPWR
EAALKKHAEEPVGKGRQTPPSISSLSPGTAAVRFFGTGAAIPGKHRNVSSLMIDMFERGS
VMMDCGEGTWGQMVRMFGQERARRVLCGLKVVFISHMHADHHLGLLTLLHERAIALREQS
VYGRGPQLVVVGPHYLASWLEAFQAAARVPLRDTLAPLKRSFKFFDAKALTDPQAPEAKF
FPDAFGLEVGCVSVIHCPLSYGIMLRDCVSGWKVVYSGDTRPCPALGEIGKGATLAIHEA
TLSDDMQDEARDKLHCTTSEALDVCVNDMGAWRTILTHFSQRYPRIPKLDDATVARLDQD
RAAFAFDLMSVDFTRLEEIPEVVPAMLDLFPDGNGVEASDIDEARARMHKACESV
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgcactcctacgtcgaggtcatcggcccgggcacgccggacgcgtcctctagtctgcac
ctctttttcgacgagggccgctatctcttcgaatgcggcgacggcactcagcgtctctgc
acagagtacggcatcaagctcggtcgtctgcgcagcattttcctcacctcccttgccgcc
ccctccatcggcggcctgctcggcctcaacctcaccctagcagacgctgggaaggagtcc
gtttccatcactgcgccgaaaggacttgcctccatcttcaaggccgcccgctccttctac
taccgcccctcgttgcaatccaccttgcatgaagtcgacttggaagcttcagtcgaaccc
ctccccgtcttggtcttggaggatgagaacgtcaatatcactgccatccctgtgcgcagt
cgcagggatatcgaaattgacacggccttcggggcacatttcgatgccctggcatatgtt
tgccgcctgcacgaccttcgtgggaagttcaatcctgcccgcgcgatggaactcggtgtg
aagaaaggacgcttattcgggcaattgcaaaggggcgtgccggtcactacggacaatggt
gtgacggtcaccccggagcaagtgatgtcaaagagcacgccaggtcccatgttcttggtc
atcccctgcccaactgtcaatcacatccaagccatcaccaagtcaaaggctctcaacccg
gtggagctgggcatcctctcggcggatgcctcgtccaacctgatgaggcgctgcgtggtc
gcccacctcgccccaaagcatgtgctagaaaataccgcgtatagagaatggtgcgactcg
ttcggtgcagatgtcagccacattcctcttcacccgtcagtcagctcgccacggacggtt
tttagtacccacgctacagatgcggcattgttgcatttcaccgttgataaagatctgttc
cccctcccatcagatgcgctcgatgcgagttctctggtctcggtaagcgaagcgcgctct
tcgcgaagcaatccagaatctgccatgccattgtctatgtgcaaaccagcgcaaccggaa
ggcttcagaacggatgagggcttcccttcgttttgcctcaaccgaactggaacttggctg
gaaggagattgtaagatgaagtttgttttgtcaccaagtgccaatgcaggtccggacatg
ggagcagtgcgaccgcgattcatagagaggatagcggggcagccgaaacatccctggcgg
gaagctgccctcaaaaagcatgcagaggagccagtggggaaaggaaggcaaacgccgccg
tcgatctcgtcgctatcaccaggcacagcggccgtgcgctttttcgggactggagcagct
atccctgggaagcacaggaacgtttcttcattgatgattgacatgttcgagcgagggagc
gtaatgatggactgtggagaaggaacatggggtcaaatggtgagaatgtttgggcaggaa
agggcaagacgggtgttgtgtggtctaaaagttgttttcatctcacacatgcatgcggac
caccacctcggccttttgacccttttacatgaacgagcaatcgctcttcgagagcagtcg
gtttacgggcgggggcctcagcttgtcgtcgttggaccgcattatttggcatcctggctg
gaggccttccaggcggcagcgagagtaccgcttcgcgacactctggcacctttgaaacgt
agcttcaagtttttcgacgccaaggcgctgacggatccacaagcgcccgaagcaaagttc
ttccccgacgcttttggactagaagtaggttgcgtcagtgtgatccattgcccactgtcg
tatggtattatgttgagggattgcgtgagtgggtggaaggttgtttattctggtgatacg
cgcccatgtccagccttgggggaaattgggaaaggggcgactctcgccattcacgaagca
actctaagcgacgatatgcaggacgaagcaagggacaagttgcactgtacaacgagcgag
gctttagatgtttgtgtgaatgatatgggagcgtggcgaacgatcctgacgcatttttct
cagaggtatccaagaattcctaaactggatgatgcaacagtggcgcgattggaccaggac
agggctgcatttgcatttgaccttatgagtgtggactttacgagattggaggaaattcct
gaagtagtccctgccatgctggacctcttcccggacgggaatggcgttgaggcaagtgat
atagacgaagctagggcgaggatgcacaaggcgtgtgagagtgtttaa
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